Andy D. Perkins

According to our database, Andy D. Perkins authored at least 25 papers between 2006 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

No-boundary thinking: a viable solution to ethical data-driven AI in precision medicine.

Tayo Obafemi-Ajayi, Andy D. Perkins, Bindu Nanduri, Donald C. Wunsch II, James A. Foster, Joan Peckham

AI Ethics, 2022

Team building without boundaries.

Andy D. Perkins, Joan Peckham, Tayo Obafemi-Ajayi, Xiuzhen Huang

Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022

NBT (no-boundary thinking): needed to attend to ethical implications of data and AI.

Joan Peckham, Andy D. Perkins, Tayo Obafemi-Ajayi, Xiuzhen Huang

Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022

2021

Microsatellites as Agents of Adaptive Change: An RNA-Seq-Based Comparative Study of Transcriptomes from Five Helianthus Species.

Chathurani Ranathunge, Sreepriya Pramod, Sébastien Renaut, Gregory L. Wheeler, Andy D. Perkins, Loren H. Rieseberg, Mark E. Welch

Symmetry, 2021

2020

Toward a more holistic method of genome assembly assessment.

Adam Thrash, Federico Hoffmann, Andy D. Perkins

BMC Bioinform., 2020

2017

No-Boundary Thinking in Bioinformatics.

Jason H. Moore, Steven F. Jennings, Casey S. Greene, Lawrence E. Hunter, Andy D. Perkins, ClarLynda R. Williams-DeVane, Donald C. Wunsch, Zhongming Zhao, Xiuzhen Huang

Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

2015

Clustering high throughput biological data with B-MST, a minimum spanning tree based heuristic.

Harun Pirim, Burak Eksioglu, Andy D. Perkins

Comput. Biol. Medicine, 2015

Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm.

Xiuzhen Huang, Steven F. Jennings, Barry Bruce, Alison Buchan, Liming Cai, Pengyin Chen, Carole L. Cramer, Weihua Guan, Uwe Hilgert, Hongmei Jiang, Zenglu Li, Gail McClure, Donald F. McMullen, Bindu Nanduri, Andy D. Perkins, Bhanu Rekepalli, Saeed Salem, Jennifer Specker, Karl Walker, Donald C. Wunsch, Donghai Xiong, Shuzhong Zhang, Yu Zhang, Zhongming Zhao, Jason H. Moore

BioData Min., 2015

Investigating genome similarity through cross mapping percentage.

Jonathan Rice, Kortni Dees, Adam Thrash, Andy D. Perkins

Proceedings of the 6th ACM Conference on Bioinformatics, 2015

2014

Proceedings of the 2014 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.

Jonathan D. Wren, Mikhail G. Dozmorov, Dennis Burian, Andy D. Perkins, Chaoyang Zhang, Peter Hoyt, Rakesh Kaundal

BMC Bioinform., 2014

2013

Proceedings of the 2013 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.

Jonathan D. Wren, Mikhail G. Dozmorov, Dennis Burian, Rakesh Kaundal, Andy D. Perkins, Edward J. Perkins, Doris M. Kupfer, Gordon K. Springer

BMC Bioinform., 2013

No-boundary thinking in bioinformatics research.

Xiuzhen Huang, Barry Bruce, Alison Buchan, Clare Bates Congdon, Carole L. Cramer, Steven F. Jennings, Hongmei Jiang, Zenglu Li, Gail McClure, Rick McMullen, Jason H. Moore, Bindu Nanduri, Joan Peckham, Andy D. Perkins, Shawn W. Polson, Bhanu Rekepalli, Saeed Salem, Jennifer Specker, Donald C. Wunsch, Donghai Xiong, Shuzhong Zhang, Zhongming Zhao

BioData Min., 2013

Statistical Methods for Ambiguous Sequence Mappings.

Tamer Aldwairi, Bindu Nanduri, Mahalingam Ramkumar, Dilip Gautam, Michael Johnson, Andy D. Perkins

Proceedings of the ACM Conference on Bioinformatics, 2013

2012

Clustering of high throughput gene expression data.

Harun Pirim, Burak Eksioglu, Andy D. Perkins, Çetin Yüceer

Comput. Oper. Res., 2012

A systematic comparison of genome-scale clustering algorithms.

Jeremy J. Jay, John D. Eblen, Yun Zhang, Mikael Benson, Andy D. Perkins, Arnold M. Saxton, Brynn H. Voy, Elissa J. Chesler, Michael A. Langston

BMC Bioinform., 2012

2011

A Systematic Comparison of Genome Scale Clustering Algorithms - (Extended Abstract).

Jeremy J. Jay, John D. Eblen, Yun Zhang, Mikael Benson, Andy D. Perkins, Arnold M. Saxton, Brynn H. Voy, Elissa J. Chesler, Michael A. Langston

Proceedings of the Bioinformatics Research and Applications - 7th International Symposium, 2011

2010

Performance evaluation of a community structure finding algorithm using modularity and C-rand measures.

Harun Pirim, Dilip Gautam, Tanmay Bhowmik, Andy D. Perkins, Burak Eksioglu

Proceedings of the International Joint Conference on Neural Networks, 2010

2009

A module-based analytical strategy to identify novel disease-associated genes shows an inhibitory role for interleukin 7 Receptor in allergic inflammation.

Reza Mobini, Bengt A. Andersson, Jonas Erjefält, Mirjana Hahn-Zoric, Michael A. Langston, Andy D. Perkins, Lars Cardell, Mikael Benson

BMC Syst. Biol., 2009

Threshold selection in gene co-expression networks using spectral graph theory techniques.

Andy D. Perkins, Michael A. Langston

BMC Bioinform., 2009

Integrating phenotype and gene expression data for predicting gene function.

Brandon M. Malone, Andy D. Perkins, Susan M. Bridges

BMC Bioinform., 2009

Using out-of-core techniques to produce exact solutions to the maximum clique problem on extremely large graphs.

Gary L. Rogers, Andy D. Perkins, Charles A. Phillips, John D. Eblen, Faisal N. Abu-Khzam, Michael A. Langston

Proceedings of the 7th IEEE/ACS International Conference on Computer Systems and Applications, 2009

2008

Innovative Computational Methods for Transcriptomic Data Analysis: A Case Study in the Use of FPT for Practical Algorithm Design and Implementation.

Michael A. Langston, Andy D. Perkins, Arnold M. Saxton, Jon A. Scharff, Brynn H. Voy

Comput. J., 2008

2006

Extracting Gene Networks for Low-Dose Radiation Using Graph Theoretical Algorithms.

Brynn H. Voy, Jon A. Scharff, Andy D. Perkins, Arnold M. Saxton, Bhavesh Borate, Elissa J. Chesler, Lisa K. Branstetter, Michael A. Langston

PLoS Comput. Biol., 2006

Innovative computational methods for transcriptomic data analysis.

Michael A. Langston, Andy D. Perkins, Arnold M. Saxton, Jon A. Scharff, Brynn H. Voy

Proceedings of the 2006 ACM Symposium on Applied Computing (SAC), 2006

Computational Analysis of Mass Spectrometry Data Using Novel Combinatorial Methods.

Ahmed Fadiel, Michael A. Langston, Xinxia Peng, Andy D. Perkins, Hugh S. Taylor, Ozge Tuncalp, D. Vitello, Paul H. Pevsner, Frederick Naftolin

Proceedings of the 2006 IEEE/ACS International Conference on Computer Systems and Applications (AICCSA 2006), 2006