Zhongming Zhao

According to our database1, Zhongming Zhao authored at least 103 papers between 2004 and 2019.

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Bibliography

2019
The International Conference on Intelligent Biology and Medicine 2018: Medical Informatics Thematic Track (MedicalInfo2018).
BMC Med. Inf. & Decision Making, 2019

Correction to: circular RNA expression profiles during the differentiation of mouse neural stem cells.
BMC Systems Biology, 2019

2018
TissGDB: tissue-specific gene database in cancer.
Nucleic Acids Research, 2018

The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: bioinformatics towards translational applications.
BMC Bioinformatics, 2018

ANCO-GeneDB: annotations and comprehensive analysis of candidate genes for alcohol, nicotine, cocaine and opioid dependence.
Database, 2018

Kinase impact assessment in the landscape of fusion genes that retain kinase domains: a pan-cancer study.
Briefings in Bioinformatics, 2018

2017
mutLBSgeneDB: mutated ligand binding site gene DataBase.
Nucleic Acids Research, 2017

SZGR 2.0: a one-stop shop of schizophrenia candidate genes.
Nucleic Acids Research, 2017

Introduction: the International Conference on Intelligent Biology and Medicine (ICIBM) 2016: special focus on medical informatics and big data.
BMC Med. Inf. & Decision Making, 2017

The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: putting systems biology to work.
BMC Systems Biology, 2017

Investigating MicroRNA and transcription factor co-regulatory networks in colorectal cancer.
BMC Bioinformatics, 2017

The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: from big data to big analytical tools.
BMC Bioinformatics, 2017

Impacts of somatic mutations on gene expression: an association perspective.
Briefings in Bioinformatics, 2017

No-Boundary Thinking in Bioinformatics.
Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

Representation Learning for Retinal Vasculature Embeddings.
Proceedings of the Fetal, Infant and Ophthalmic Medical Image Analysis, 2017

TrapRM: Transcriptomic and proteomic rule mining using weighted shortest distance based multiple minimum supports for multi-omics dataset.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016
Two Algorithms for the Detection and Tracking of Moving Vehicle Targets in Aerial Infrared Image Sequences.
Remote Sensing, 2016

Systems Biology-Based Investigation of Cellular Antiviral Drug Targets Identified by Gene-Trap Insertional Mutagenesis.
PLoS Computational Biology, 2016

TSGene 2.0: an updated literature-based knowledgebase for tumor suppressor genes.
Nucleic Acids Research, 2016

ccmGDB: a database for cancer cell metabolism genes.
Nucleic Acids Research, 2016

An informatics research agenda to support precision medicine: seven key areas.
JAMIA, 2016

A network-based drug repositioning infrastructure for precision cancer medicine through targeting significantly mutated genes in the human cancer genomes.
JAMIA, 2016

Advancing Systems Biology in the International Conference on Intelligent Biology and Medicine (ICIBM) 2015.
BMC Systems Biology, 2016

Investigating cellular network heterogeneity and modularity in cancer: a network entropy and unbalanced motif approach.
BMC Systems Biology, 2016

Systematic dissection of dysregulated transcription factor-miRNA feed-forward loops across tumor types.
Briefings in Bioinformatics, 2016

Advances in computational approaches for prioritizing driver mutations and significantly mutated genes in cancer genomes.
Briefings in Bioinformatics, 2016

2015
Continuous Change Detection and Classification Using Hidden Markov Model: A Case Study for Monitoring Urban Encroachment onto Farmland in Beijing.
Remote Sensing, 2015

Deciphering Signaling Pathway Networks to Understand the Molecular Mechanisms of Metformin Action.
PLoS Computational Biology, 2015

A Gene Gravity Model for the Evolution of Cancer Genomes: A Study of 3, 000 Cancer Genomes across 9 Cancer Types.
PLoS Computational Biology, 2015

A weighted and integrated drug-target interactome: drug repurposing for schizophrenia as a use case.
BMC Systems Biology, 2015

Snowball: resampling combined with distance-based regression to discover transcriptional consequences of a driver mutation.
Bioinformatics, 2015

EW_dmGWAS: edge-weighted dense module search for genome-wide association studies and gene expression profiles.
Bioinformatics, 2015

Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm.
BioData Mining, 2015

2014
Parcel-Based Change Detection in Land-Use Maps by Adopting the Holistic Feature.
IEEE J Sel. Topics in Appl. Earth Observ. and Remote Sensing, 2014

VarWalker: Personalized Mutation Network Analysis of Putative Cancer Genes from Next-Generation Sequencing Data.
PLoS Computational Biology, 2014

The oncogenic and prognostic potential of eight microRNAs identified by a synergetic regulatory network approach in lung cancer.
I. J. Computational Biology and Drug Design, 2014

Integrated Approach in Systems Biology.
Comp. Math. Methods in Medicine, 2014

Evaluating four major algorithms for identifying differential regulators in condition-specific transcriptional responses.
BMC Bioinformatics, 2014

2013
TSGene: a web resource for tumor suppressor genes.
Nucleic Acids Research, 2013

Dynamic protein interaction modules in human hepatocellular carcinoma progression.
BMC Systems Biology, 2013

Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives.
BMC Bioinformatics, 2013

Differential coexpression network modules observed in human hepatocellular carcinoma progression.
BMC Bioinformatics, 2013

A short tutorial in analyzing NGS data of cancer genomes for somatic mutation calling.
BMC Bioinformatics, 2013

Identifying transcription factor and microRNA mediated synergetic regulatory networks in lung cancer.
BMC Bioinformatics, 2013

Network analysis of gene fusions in human cancer.
BMC Bioinformatics, 2013

No-boundary thinking in bioinformatics research.
BioData Mining, 2013

Application of next generation sequencing to human gene fusion detection: computational tools, features and perspectives.
Briefings in Bioinformatics, 2013

Correlating adverse drug reactions with biological pathways in humans.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Network-based mutation analysis of putative cancer genes from next-generation sequencing data.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012
Uncovering MicroRNA and Transcription Factor Mediated Regulatory Networks in Glioblastoma.
PLoS Computational Biology, 2012

Network-Assisted Investigation of Combined Causal Signals from Genome-Wide Association Studies in Schizophrenia.
PLoS Computational Biology, 2012

Large-scale prediction of adverse drug reactions using chemical, biological, and phenotypic properties of drugs.
JAMIA, 2012

Integrative pathway analysis of genome-wide association studies and gene expression data in prostate cancer.
BMC Systems Biology, 2012

Advances in systems biology: computational algorithms and applications.
BMC Systems Biology, 2012

DTome: a web-based tool for drug-target interactome construction.
BMC Bioinformatics, 2012

BioEve Search: A Novel Framework to Facilitate Interactive Literature Search.
Adv. Bioinformatics, 2012

Ranking Gene-Drug Relationships in Biomedical Literature Using Latent Dirichlet Allocation.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

Comprehensive analyses of tumor suppressor genes in protein-protein interaction networks: A topological perspective.
Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012

A comparative study of methods for detecting small somatic variants in disease-normal paired next generation sequencing data.
Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012

A network and functional investigation of illicit drugs and their targets.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

2011
Multiple-cue saliency measurement and optimized image composition for image retargeting.
J. Computational Applied Mathematics, 2011

MentalSquares: A generic bipolar Support Vector Machine for psychiatric disorder classification, diagnostic analysis and neurobiological data mining.
IJDMB, 2011

Virus interactions with human signal transduction pathways.
I. J. Computational Biology and Drug Design, 2011

Gene regulation in glioblastoma: a combinatorial analysis of microRNAs and transcription factors.
I. J. Computational Biology and Drug Design, 2011

Do cancer proteins really interact strongly in the human protein-protein interaction network?
Computational Biology and Chemistry, 2011

A comprehensive network and pathway analysis of candidate genes in major depressive disorder.
BMC Systems Biology, 2011

Identifying the key genes and pathways in the progression of hepatitis C virus induced hepatocellular carcinoma using a systems biology approach.
BMC Bioinformatics, 2011

An efficient hierarchical generalized linear mixed model for pathway analysis of genome-wide association studies.
Bioinformatics, 2011

dmGWAS: dense module searching for genome-wide association studies in protein-protein interaction networks.
Bioinformatics, 2011

Do MicroRNAs Preferentially Target the Genes with Low DNA Methylation Level at the Promoter Region?
Proceedings of the Bio-Inspired Computing and Applications, 2011

Network-assisted causal gene detection in genome-wide association studies: an improved module search algorithm.
Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

Development and implementation of a novel computational tool for an efficient construction of drug-target interactome.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

2010
Assessing gene length biases in gene set analysis of Genome-Wide Association Studies.
I. J. Computational Biology and Drug Design, 2010

Identifying genes progressively silenced in preneoplastic and neoplastic liver tissues.
I. J. Computational Biology and Drug Design, 2010

A Novel microRNA and transcription factor mediated regulatory network in schizophrenia.
BMC Systems Biology, 2010

Pathway- and network-based analysis of GWAS data revealed susceptibility gene sets to schizophrenia.
BMC Bioinformatics, 2010

Application of Pearson correlation coefficient (PCC) and Kolmogorov-Smirnov distance (KSD) metrics to identify disease-specific biomarker genes.
BMC Bioinformatics, 2010

Gene- and evidence-based candidate gene selection for schizophrenia and gene feature analysis.
Artificial Intelligence in Medicine, 2010

Genome-Wide DNA Methylation Profiling in 40 Breast Cancer Cell Lines.
Proceedings of the Advanced Intelligent Computing Theories and Applications, 2010

2009
ERGR: An ethanol-related gene resource.
Nucleic Acids Research, 2009

CpG islands or CpG clusters: how to identify functional GC-rich regions in a genome?
BMC Bioinformatics, 2009

A multi-dimensional evidence-based candidate gene prioritization approach for complex diseases-schizophrenia as a case.
Bioinformatics, 2009

Global Network Features of Cancer Genes in the Human Interactome.
Proceedings of the International Joint Conferences on Bioinformatics, 2009

Pathway and Network Analysis of Schizophrenia Candidate Genes under Meta-Analysis Linkage Peaks.
Proceedings of the International Joint Conferences on Bioinformatics, 2009

SmartWarf - A portable automated warfarin dosing tool.
Proceedings of the 2009 International Symposium on Collaborative Technologies and Systems, 2009

2008
A fast two-step deblurring method for satellite images.
Proceedings of the IEEE International Conference on Systems, 2008

An SVM-Based Algorithm for Classifying Promoter-Associated CpG Islands in the Human and Mouse Genomes.
Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Artificial Intelligence, 2008

FindSUMO: A PSSM-Based Method for Sumoylation Site Prediction.
Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Artificial Intelligence, 2008

Building Change Detection Based on Similarity Calibration.
Proceedings of the Fifth International Conference on Fuzzy Systems and Knowledge Discovery, 2008

Schizophrenia Genes: Characteristics of Function and Protein Interaction Networks.
Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008

2007
InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes.
BMC Bioinformatics, 2007

2005
SNPNB: analyzing neighboring-nucleotide biases on single nucleotide polymorphisms (SNPs).
Bioinformatics, 2005

A fused road detection approach in high resolution multi-spectrum remote sensing imagery.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2005

The indigenous remote sensing image processing system and its exertion strategy.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2005

Multi-scale segmentation of the high resolution remote sensing image.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2005

Clouds and cloud shadows removal from high-resolution remote sensing images.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2005

Image compression based on unrestrained sized wavelet transform.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2005

A new identification method for artificial objects based on various features.
Proceedings of the Color Imaging X: Processing, Hardcopy, and Applications, San Jose, 2005

2004
Urban building extraction from high-resolution satellite panchromatic image using clustering and edge detection.
Proceedings of the 2004 IEEE International Geoscience and Remote Sensing Symposium, 2004

An algorithm for eliminating the isolated regions based on connected area in image classification.
Proceedings of the 2004 IEEE International Geoscience and Remote Sensing Symposium, 2004

Texture image segmentation based on wavelet-domain hidden Markov models.
Proceedings of the 2004 IEEE International Geoscience and Remote Sensing Symposium, 2004

Remote sensing study based on IRSA Remote Sensing Image Processing System.
Proceedings of the 2004 IEEE International Geoscience and Remote Sensing Symposium, 2004

An integrated classification strategy of hyperspectral imaging spectrometer data.
Proceedings of the 2004 IEEE International Geoscience and Remote Sensing Symposium, 2004


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