Zhongming Zhao
Orcid: 0000-0002-3477-0914
According to our database1,
Zhongming Zhao
authored at least 156 papers
between 2003 and 2024.
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Bibliography
2024
Enabling the clinical application of artificial intelligence in genomics: a perspective of the AMIA Genomics and Translational Bioinformatics Workgroup.
J. Am. Medical Informatics Assoc., January, 2024
2023
BMC Bioinform., December, 2023
Optimal ranking and directional signature classification using the integral strategy of multi-objective optimization-based association rule mining of multi-omics data.
Frontiers Bioinform., May, 2023
Benchmark of embedding-based methods for accurate and transferable prediction of drug response.
Briefings Bioinform., May, 2023
<i>deCS</i>: A Tool for Systematic Cell Type Annotations of Single-cell RNA Sequencing Data among Human Tissues.
Genom. Proteom. Bioinform., April, 2023
Deep learning for detecting and elucidating human T-cell leukemia virus type 1 integration in the human genome.
Patterns, February, 2023
SMLBT: secure machine learning and blockchain-based telemedicine model for the remote areas of developing countries.
Int. J. Comput. Biol. Drug Des., 2023
2022
NetBCE: An Interpretable Deep Neural Network for Accurate Prediction of Linear B-cell Epitopes.
Genom. Proteom. Bioinform., October, 2022
Unsupervised Feature Selection Using an Integrated Strategy of Hierarchical Clustering With Singular Value Decomposition: An Integrative Biomarker Discovery Method With Application to Acute Myeloid Leukemia.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
Designing optimal convolutional neural network architecture using differential evolution algorithm.
Patterns, 2022
Nucleic Acids Res., 2022
Comparison of five supervised feature selection algorithms leading to top features and gene signatures from multi-omics data in cancer.
BMC Bioinform., 2022
Grid-Search Integrated Optimized Support Vector Machine Model for Breast Cancer Detection.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022
2021
EmptyNN: A neural network based on positive and unlabeled learning to remove cell-free droplets and recover lost cells in scRNA-seq data.
Patterns, 2021
Artificial image objects for classification of schizophrenia with GWAS-selected SNVs and convolutional neural network.
Patterns, 2021
Nat. Mach. Intell., 2021
DeepFun: a deep learning sequence-based model to decipher non-coding variant effect in a tissue- and cell type-specific manner.
Nucleic Acids Res., 2021
Nucleic Acids Res., 2021
Deep4mC: systematic assessment and computational prediction for DNA N4-methylcytosine sites by deep learning.
Briefings Bioinform., 2021
Briefings Bioinform., 2021
Distinct effect of prenatal and postnatal brain expression across 20 brain disorders and anthropometric social traits: a systematic study of spatiotemporal modularity.
Briefings Bioinform., 2021
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
Mining Cancer Cell Line-Based Drugs to Benefit KRAS<sup>(G12D)</sup> Pancreatic Adenocarcinoma Patients.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
2020
The International Conference on Intelligent Biology and Medicine 2019: computational methods for drug interactions.
BMC Medical Informatics Decis. Mak., March, 2020
Nucleic Acids Res., 2020
Nucleic Acids Res., 2020
BMC Medical Informatics Decis. Mak., 2020
Correction to: The International Conference on Intelligent Biology and Medicine 2019: computational methods for drug interactions.
BMC Medical Informatics Decis. Mak., 2020
SURE-based optimum-length S-G filter to reconstruct NDVI time series iteratively with outliers removal.
Int. J. Wavelets Multiresolution Inf. Process., 2020
Drug Repurposing for COVID-19 using Graph Neural Network with Genetic, Mechanistic, and Epidemiological Validation.
CoRR, 2020
Correction to: The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases.
BMC Bioinform., 2020
BMC Bioinform., 2020
Accelerating bioinformatics research with International Conference on Intelligent Biology and Medicine 2020.
BMC Bioinform., 2020
6mA-Finder: a novel online tool for predicting DNA N6-methyladenine sites in genomes.
Bioinform., 2020
Graph- and rule-based learning algorithms: a comprehensive review of their applications for cancer type classification and prognosis using genomic data.
Briefings Bioinform., 2020
Critical microRNAs and regulatory motifs in cleft palate identified by a conserved miRNA-TF-gene network approach in humans and mice.
Briefings Bioinform., 2020
2019
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019
The International Conference on Intelligent Biology and Medicine 2018: Medical Informatics Thematic Track (MedicalInfo2018).
BMC Medical Informatics Decis. Mak., 2019
Distance based knowledge retrieval through rule mining for complex biomarker recognition from tri-omics profiles.
Int. J. Comput. Biol. Drug Des., 2019
Correction to: circular RNA expression profiles during the differentiation of mouse neural stem cells.
BMC Syst. Biol., 2019
The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases.
BMC Bioinform., 2019
Bioinform., 2019
CNet: a multi-omics approach to detecting clinically associated, combinatory genomic signatures.
Bioinform., 2019
Translational bioinformatics in mental health: open access data sources and computational biomarker discovery.
Briefings Bioinform., 2019
Distinct telomere length and molecular signatures in seminoma and non-seminoma of testicular germ cell tumor.
Briefings Bioinform., 2019
A Multi-classifier Model to Identify Mitochondrial Respiratory Gene Signatures in Human Cancer.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019
2018
The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: bioinformatics towards translational applications.
BMC Bioinform., 2018
ANCO-GeneDB: annotations and comprehensive analysis of candidate genes for alcohol, nicotine, cocaine and opioid dependence.
Database J. Biol. Databases Curation, 2018
Kinase impact assessment in the landscape of fusion genes that retain kinase domains: a pan-cancer study.
Briefings Bioinform., 2018
2017
Towards integrated oncogenic marker recognition through mutual information-based statistically significant feature extraction: an association rule mining based study on cancer expression and methylation profiles.
Quant. Biol., 2017
Introduction: the International Conference on Intelligent Biology and Medicine (ICIBM) 2016: special focus on medical informatics and big data.
BMC Medical Informatics Decis. Mak., 2017
The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: putting systems biology to work.
BMC Syst. Biol., 2017
Investigating MicroRNA and transcription factor co-regulatory networks in colorectal cancer.
BMC Bioinform., 2017
The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: from big data to big analytical tools.
BMC Bioinform., 2017
Briefings Bioinform., 2017
Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017
Proceedings of the Fetal, Infant and Ophthalmic Medical Image Analysis, 2017
TrapRM: Transcriptomic and proteomic rule mining using weighted shortest distance based multiple minimum supports for multi-omics dataset.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
2016
Two Algorithms for the Detection and Tracking of Moving Vehicle Targets in Aerial Infrared Image Sequences.
Remote. Sens., 2016
Systems Biology-Based Investigation of Cellular Antiviral Drug Targets Identified by Gene-Trap Insertional Mutagenesis.
PLoS Comput. Biol., 2016
Nucleic Acids Res., 2016
J. Am. Medical Informatics Assoc., 2016
A network-based drug repositioning infrastructure for precision cancer medicine through targeting significantly mutated genes in the human cancer genomes.
J. Am. Medical Informatics Assoc., 2016
Advancing Systems Biology in the International Conference on Intelligent Biology and Medicine (ICIBM) 2015.
BMC Syst. Biol., 2016
Investigating cellular network heterogeneity and modularity in cancer: a network entropy and unbalanced motif approach.
BMC Syst. Biol., 2016
Systematic dissection of dysregulated transcription factor-miRNA feed-forward loops across tumor types.
Briefings Bioinform., 2016
Advances in computational approaches for prioritizing driver mutations and significantly mutated genes in cancer genomes.
Briefings Bioinform., 2016
2015
SGDriver: a novel structural genomics-based approach to prioritize cancer related and potentially druggable somatic mutations.
BMC Bioinform., December, 2015
Continuous Change Detection and Classification Using Hidden Markov Model: A Case Study for Monitoring Urban Encroachment onto Farmland in Beijing.
Remote. Sens., 2015
Deciphering Signaling Pathway Networks to Understand the Molecular Mechanisms of Metformin Action.
PLoS Comput. Biol., 2015
A Gene Gravity Model for the Evolution of Cancer Genomes: A Study of 3, 000 Cancer Genomes across 9 Cancer Types.
PLoS Comput. Biol., 2015
A weighted and integrated drug-target interactome: drug repurposing for schizophrenia as a use case.
BMC Syst. Biol., 2015
Snowball: resampling combined with distance-based regression to discover transcriptional consequences of a driver mutation.
Bioinform., 2015
EW_dmGWAS: edge-weighted dense module search for genome-wide association studies and gene expression profiles.
Bioinform., 2015
Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm.
BioData Min., 2015
2014
IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens., 2014
VarWalker: Personalized Mutation Network Analysis of Putative Cancer Genes from Next-Generation Sequencing Data.
PLoS Comput. Biol., 2014
The oncogenic and prognostic potential of eight microRNAs identified by a synergetic regulatory network approach in lung cancer.
Int. J. Comput. Biol. Drug Des., 2014
Evaluating four major algorithms for identifying differential regulators in condition-specific transcriptional responses.
BMC Bioinform., 2014
2013
BMC Syst. Biol., 2013
Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives.
BMC Bioinform., 2013
Differential coexpression network modules observed in human hepatocellular carcinoma progression.
BMC Bioinform., 2013
A short tutorial in analyzing NGS data of cancer genomes for somatic mutation calling.
BMC Bioinform., 2013
Identifying transcription factor and microRNA mediated synergetic regulatory networks in lung cancer.
BMC Bioinform., 2013
Application of next generation sequencing to human gene fusion detection: computational tools, features and perspectives.
Briefings Bioinform., 2013
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
Network-based mutation analysis of putative cancer genes from next-generation sequencing data.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
2012
Uncovering MicroRNA and Transcription Factor Mediated Regulatory Networks in Glioblastoma.
PLoS Comput. Biol., 2012
Network-Assisted Investigation of Combined Causal Signals from Genome-Wide Association Studies in Schizophrenia.
PLoS Comput. Biol., 2012
Large-scale prediction of adverse drug reactions using chemical, biological, and phenotypic properties of drugs.
J. Am. Medical Informatics Assoc., 2012
Integrative pathway analysis of genome-wide association studies and gene expression data in prostate cancer.
BMC Syst. Biol., 2012
BMC Syst. Biol., 2012
BMC Bioinform., 2012
Adv. Bioinformatics, 2012
Ranking Gene-Drug Relationships in Biomedical Literature Using Latent Dirichlet Allocation.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012
Comprehensive analyses of tumor suppressor genes in protein-protein interaction networks: A topological perspective.
Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012
A comparative study of methods for detecting small somatic variants in disease-normal paired next generation sequencing data.
Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012
2011
Multiple-cue saliency measurement and optimized image composition for image retargeting.
J. Comput. Appl. Math., 2011
MentalSquares: A generic bipolar Support Vector Machine for psychiatric disorder classification, diagnostic analysis and neurobiological data mining.
Int. J. Data Min. Bioinform., 2011
Int. J. Comput. Biol. Drug Des., 2011
Gene regulation in glioblastoma: a combinatorial analysis of microRNAs and transcription factors.
Int. J. Comput. Biol. Drug Des., 2011
Do cancer proteins really interact strongly in the human protein-protein interaction network?
Comput. Biol. Chem., 2011
A comprehensive network and pathway analysis of candidate genes in major depressive disorder.
BMC Syst. Biol., 2011
Identifying the key genes and pathways in the progression of hepatitis C virus induced hepatocellular carcinoma using a systems biology approach.
BMC Bioinform., 2011
An efficient hierarchical generalized linear mixed model for pathway analysis of genome-wide association studies.
Bioinform., 2011
dmGWAS: dense module searching for genome-wide association studies in protein-protein interaction networks.
Bioinform., 2011
Do MicroRNAs Preferentially Target the Genes with Low DNA Methylation Level at the Promoter Region?
Proceedings of the Bio-Inspired Computing and Applications, 2011
Network-assisted causal gene detection in genome-wide association studies: an improved module search algorithm.
Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011
Development and implementation of a novel computational tool for an efficient construction of drug-target interactome.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011
2010
Assessing gene length biases in gene set analysis of Genome-Wide Association Studies.
Int. J. Comput. Biol. Drug Des., 2010
Identifying genes progressively silenced in preneoplastic and neoplastic liver tissues.
Int. J. Comput. Biol. Drug Des., 2010
A Novel microRNA and transcription factor mediated regulatory network in schizophrenia.
BMC Syst. Biol., 2010
Pathway- and network-based analysis of GWAS data revealed susceptibility gene sets to schizophrenia.
BMC Bioinform., 2010
Application of Pearson correlation coefficient (PCC) and Kolmogorov-Smirnov distance (KSD) metrics to identify disease-specific biomarker genes.
BMC Bioinform., 2010
Gene- and evidence-based candidate gene selection for schizophrenia and gene feature analysis.
Artif. Intell. Medicine, 2010
Proceedings of the Advanced Intelligent Computing Theories and Applications, 2010
Investigating microRNA-transcription factor mediated regulatory network in glioblastoma.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010
2009
BMC Bioinform., 2009
A multi-dimensional evidence-based candidate gene prioritization approach for complex diseases-schizophrenia as a case.
Bioinform., 2009
Proceedings of the International Joint Conferences on Bioinformatics, 2009
Pathway and Network Analysis of Schizophrenia Candidate Genes under Meta-Analysis Linkage Peaks.
Proceedings of the International Joint Conferences on Bioinformatics, 2009
Proceedings of the 2009 International Symposium on Collaborative Technologies and Systems, 2009
2008
Proceedings of the IEEE International Conference on Systems, 2008
An SVM-Based Algorithm for Classifying Promoter-Associated CpG Islands in the Human and Mouse Genomes.
Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Artificial Intelligence, 2008
Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Artificial Intelligence, 2008
Proceedings of the Fifth International Conference on Fuzzy Systems and Knowledge Discovery, 2008
Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008
2007
InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes.
BMC Bioinform., 2007
2005
SNPNB: analyzing neighboring-nucleotide biases on single nucleotide polymorphisms (SNPs).
Bioinform., 2005
A fused road detection approach in high resolution multi-spectrum remote sensing imagery.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2005
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2005
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2005
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2005
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2005
Proceedings of the Color Imaging X: Processing, Hardcopy, and Applications, San Jose, 2005
2004
Urban building extraction from high-resolution satellite panchromatic image using clustering and edge detection.
Proceedings of the 2004 IEEE International Geoscience and Remote Sensing Symposium, 2004
An algorithm for eliminating the isolated regions based on connected area in image classification.
Proceedings of the 2004 IEEE International Geoscience and Remote Sensing Symposium, 2004
Proceedings of the 2004 IEEE International Geoscience and Remote Sensing Symposium, 2004
Proceedings of the 2004 IEEE International Geoscience and Remote Sensing Symposium, 2004
Proceedings of the 2004 IEEE International Geoscience and Remote Sensing Symposium, 2004
2003
Proceedings of the 2003 IEEE International Geoscience and Remote Sensing Symposium, 2003
Automatic change detection of artificial objects in multitemporal high spatial resolution remotely sensed imagery.
Proceedings of the 2003 IEEE International Geoscience and Remote Sensing Symposium, 2003