Bernard J. Pope

According to our database, Bernard J. Pope authored at least 16 papers between 2001 and 2020.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2020

HiTIME: An efficient model-selection approach for the detection of unknown drug metabolites in LC-MS data.

Michael G. Leeming, Andrew P. Isaac, Luke Zappia, Richard A. J. O'hair, William A. Donald, Bernard J. Pope

SoftwareX, 2020

2017

Four simple recommendations to encourage best practices in research software.

Rafael C. Jiménez, Mateusz Kuzak, Monther Alhamdoosh, Michelle Barker, Bérénice Batut, Mikael Borg, Salvador Capella-Gutiérrez, Neil P. Chue Hong, Martin Cook, Manuel Corpas, Madison Flannery, Leyla J. García, Josep Lluis Gelpí, Simon L. Gladman, Carole A. Goble, Montserrat González Ferreiro, Alejandra N. González-Beltrán, Philippa C. Griffin, Björn A. Grüning, Jonas Hagberg, Petr Holub, Rob W. W. Hooft, Jon C. Ison, Daniel S. Katz, Brane Leskosek, Federico López-Gómez, Luis J. Oliveira, David Mellor, Rowland Mosbergen, Nicola J. Mulder, Yasset Pérez-Riverol, Robert Pergl, Horst Pichler, Bernard J. Pope, Ferran Sanz, Maria Victoria Schneider, Victoria Stodden, Radoslaw Suchecki, Radka Svobodová Vareková, Harry-Anton Talvik, Ilian T. Todorov, Andrew E. Treloar, Sonika Tyagi, Maarten van Gompel, Daniel Vaughan, Allegra Via, Xiaochuan Wang, Nathan S. Watson-Haigh, Steve Crouch

F1000Research, 2017

Best practice data life cycle approaches for the life sciences.

Philippa C. Griffin, Jyoti Khadake, Kate S. LeMay, Suzanna E. Lewis, Sandra E. Orchard, Andrew Pask, Bernard J. Pope, Ute Roessner, Keith Russell, Torsten Seemann, Andrew E. Treloar, Sonika Tyagi, Jeffrey H. Christiansen, Saravanan Dayalan, Simon Gladman, Sandra B. Hangartner, Helen L. Hayden, William W. H. Ho, Gabriel Keeble-Gagnère, Pasi K. Korhonen, Peter Neish, Priscilla R. Prestes, Mark F. Richardson, Nathan S. Watson-Haigh, Kelly L. Wyres, Neil D. Young, Maria Victoria Schneider

F1000Research, 2017

2016

MethPat: a tool for the analysis and visualisation of complex methylation patterns obtained by massively parallel sequencing.

Nicholas C. Wong, Bernard J. Pope, Ida L. Candiloro, Darren Korbie, Matt Trau, Stephen Q. Wong, Thomas Mikeska, Xinmin Zhang, Mark Pitman, Stefanie Eggers, Stephen R. Doyle, Alexander Dobrovic

BMC Bioinform., 2016

UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing.

Daniel J. Park, Roger Li, Edmund Lau, Peter Georgeson, Tu Nguyen-Dumont, Bernard J. Pope

BMC Bioinform., 2016

2014

ROVER variant caller: read-pair overlap considerate variant-calling software applied to PCR-based massively parallel sequencing datasets.

Bernard J. Pope, Tu Nguyen-Dumont, Fleur Hammet, Daniel J. Park

Source Code Biol. Medicine, 2014

Annokey: an annotation tool based on key term search of the NCBI Entrez Gene database.

Daniel J. Park, Tu Nguyen-Dumont, Sori Kang, Karin Verspoor, Bernard J. Pope

Source Code Biol. Medicine, 2014

2013

FAVR (Filtering and Annotation of Variants that are Rare): methods to facilitate the analysis of rare germline genetic variants from massively parallel sequencing datasets.

Bernard J. Pope, Tu Nguyen-Dumont, Fabrice Odefrey, Russell Bell, Sean V. Tavtigian, David E. Goldgar, Andrew Lonie, Melissa C. Southey, Daniel J. Park

BMC Bioinform., 2013

2012

Bpipe: a tool for running and managing bioinformatics pipelines.

Simon P. Sadedin, Bernard J. Pope, Alicia Oshlack

Bioinform., 2012

2011

Performance of Hybrid Programming Models for Multiscale Cardiac Simulations: Preparing for Petascale Computation.

Bernard J. Pope, Blake G. Fitch, Michael Pitman, John Jeremy Rice, Matthias Reumann

IEEE Trans. Biomed. Eng., 2011

Petascale computation performance of lightweight multiscale cardiac models using hybrid programming models.

Bernard J. Pope, Blake G. Fitch, Michael C. Pitman, John Jeremy Rice, Matthias Reumann

Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

2007

A lightweight interactive debugger for haskell.

Simon Marlow, José Iborra, Bernard J. Pope, Andy Gill

Proceedings of the ACM SIGPLAN Workshop on Haskell, 2007

2004

Declarative Debugging with Buddha.

Bernard J. Pope

Proceedings of the Advanced Functional Programming, 2004

2003

Practical aspects of declarative debugging in Haskell 98.

Bernard J. Pope, Lee Naish

Proceedings of the 5th International ACM SIGPLAN Conference on Principles and Practice of Declarative Programming, 2003

A Program Transformation for Debugging Haskell 98.

Bernard J. Pope, Lee Naish

Proceedings of the Computer Science 2003, 2003

2001

Specialisation of Higher-Order Functions for Debugging.

Bernard J. Pope, Lee Naish

Proceedings of the International Workshop on Functional and (Constraint) Logic Programming, 2001