Hans-Peter Lenhof

According to our database1, Hans-Peter Lenhof authored at least 77 papers between 1991 and 2018.

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Bibliography

2018
miRCarta: a central repository for collecting miRNA candidates.
Nucleic Acids Research, 2018

Genome-wide MicroRNA Expression Profiles in COPD: Early Predictors for Cancer Development.
Genomics, Proteomics & Bioinformatics, 2018

REGGAE: a novel approach for the identification of key transcriptional regulators.
Bioinformatics, 2018

A high-resolution map of the human small non-coding transcriptome.
Bioinformatics, 2018

2017
RegulatorTrail: a web service for the identification of key transcriptional regulators.
Nucleic Acids Research, 2017

miRPathDB: a new dictionary on microRNAs and target pathways.
Nucleic Acids Research, 2017

Phylogenomics with Paralogs.
CoRR, 2017

2016
EDISON-WMW: Exact Dynamic Programing Solution of the Wilcoxon-Mann-Whitney Test.
Genomics, Proteomics & Bioinformatics, 2016

Multi-omics enrichment analysis using the GeneTrail2 web service.
Bioinformatics, 2016

2015
Network-based interactive navigation and analysis of large biological datasets.
it - Information Technology, 2015

ballaxy: web services for structural bioinformatics.
Bioinformatics, 2015

2014
Efficient computation of root mean square deviations under rigid transformations.
Journal of Computational Chemistry, 2014

2013
NightShift: NMR Shift Inference by General Hybrid Model Training - a Framework for NMR Chemical Shift Prediction.
BMC Bioinformatics, 2013

NetworkTrail - a web service for identifying and visualizing deregulated subnetworks.
Bioinformatics, 2013

Efficient Interpretation of Tandem Mass Tags in Top-Down Proteomics.
Proceedings of the German Conference on Bioinformatics 2013, 2013

PresentaBALL - A powerful package for presentations and lessons in structural biology.
Proceedings of the IEEE Symposium on Biological Data Visualization, 2013

2012
miRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases.
BMC Bioinformatics, 2012

ProteinScanAR - An Augmented Reality Web Application for High School Education in Biomolecular Life Sciences.
Proceedings of the 16th International Conference on Information Visualisation, 2012

2011
Automated bond order assignment as an optimization problem.
Bioinformatics, 2011

2010
A new Lamarckian genetic algorithm for flexible ligand-receptor docking.
Journal of Computational Chemistry, 2010

Visuelle Analytik biologischer Daten.
Informatik Spektrum, 2010

BALL - biochemical algorithms library 1.3.
BMC Bioinformatics, 2010

Real-Time Ray Tracing of Complex Molecular Scenes.
Proceedings of the 14th International Conference on Information Visualisation, 2010

Measuring properties of molecular surfaces using ray casting.
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

2009
A consensus line search algorithm for molecular potential energy functions.
Journal of Computational Chemistry, 2009

A new method for the gradient-based optimization of molecular complexes.
Journal of Computational Chemistry, 2009

Large-scale antibody profiling of human blood sera: The future of molecular diagnosis.
Informatik Spektrum, 2009

A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis.
Bioinformatics, 2009

Automated Bond Order Assignment as an Optimization Problem.
Proceedings of the German Conference on Bioinformatics 2009, 2009

Integer Linear Programming in Computational Biology.
Proceedings of the Efficient Algorithms, 2009

2008
GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments.
BMC Bioinformatics, 2008

2007
SePaCS - a web-based application for classification of seroreactivity profiles.
Nucleic Acids Research, 2007

GeneTrail - advanced gene set enrichment analysis.
Nucleic Acids Research, 2007

Abstract analysis of pathways using the BN++ software framework.
BMC Systems Biology, 2007

BNDB - The Biochemical Network Database.
BMC Bioinformatics, 2007

Computation of significance scores of unweighted Gene Set Enrichment Analyses.
BMC Bioinformatics, 2007

Electrostatic potentials of proteins in water: a structured continuum approach.
Bioinformatics, 2007

2006
A branch-and-cut algorithm for multiple sequence alignment.
Math. Program., 2006

BN++ - A Biological Information System.
J. Integrative Bioinformatics, 2006

A minimally invasive multiple marker approach allows highly efficient detection of meningioma tumors.
BMC Bioinformatics, 2006

BALLView: a tool for research and education in molecular modeling.
Bioinformatics, 2006

2005
GraBCas: a bioinformatics tool for score-based prediction of Caspase- and Granzyme B-cleavage sites in protein sequences.
Nucleic Acids Research, 2005

BALLView: An object-oriented molecular visualization and modeling framework.
Journal of Computer-Aided Molecular Design, 2005

Glycosylation Patterns of Proteins Studied by Liquid Chromatography-Mass Spectrometry and Bioinformatic Tools.
Proceedings of the Computational Proteomics, 20.-25. November 2005, 2005

2004
Molekulare Bioinformatik.
it - Information Technology, 2004

2002
A Combinatorial Approach to Protein Docking with Flexible Side Chains.
Journal of Computational Biology, 2002

BioMiner - modeling, analyzing, and visualizing biochemical pathways and networks.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

Multiple sequence alignment with arbitrary gap costs: Computing an optimal solution using polyhedral combinatorics.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

2001
A NMR-spectra-based scoring function for protein docking.
Proceedings of the Fifth Annual International Conference on Computational Biology, 2001

2000
Rapid Software Prototyping in Molecular Modeling Using the Biochemical Algorithms Library (BALL).
ACM Journal of Experimental Algorithmics, 2000

Simulating synthetic polymer chains in parallel.
Future Generation Comp. Syst., 2000

A polyhedral approach to sequence alignment problems.
Discrete Applied Mathematics, 2000

BALL-rapid software prototyping in computational molecular biology.
Bioinformatics, 2000

A combinatorial approach to protein docking with flexible side-chains.
Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000

Workshop "Molekulare Bioinformatik".
Proceedings of the Informatik 2000, 2000

1999
An exact solution for the segment-to-segment multiple sequence alignment problem.
Bioinformatics, 1999

BALL: Biochemical Algorithms Library.
Proceedings of the Algorithm Engineering, 1999

q-gram based database searching using a suffix array (QUASAR).
Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999

Simulating Synthetic Polymer Chains in Parallel.
Proceedings of the High-Performance Computing and Networking, 7th International Conference, 1999

Rapid Software Prototyping in Computational Molecular Biology.
German Conference on Bioinformatics, 1999

1998
A Polyhedral Approach to RNA Sequence Structure Alignment.
Journal of Computational Biology, 1998

A polyhedral approach to RNA sequence structure alignment.
Proceedings of the Second Annual International Conference on Research in Computational Molecular Biology, 1998

An exact solution for the Segment-to-Segment multiple sequence alignment problem.
German Conference on Bioinformatics, 1998

1997
A branch-and-cut algorithm for multiple sequence alignment.
Proceedings of the First Annual International Conference on Research in Computational Molecular Biology, 1997

New contact measures for the protein docking problem.
Proceedings of the First Annual International Conference on Research in Computational Molecular Biology, 1997

Parallel MD-Simulations of Synthetic Polymers.
Proceedings of the Eighth SIAM Conference on Parallel Processing for Scientific Computing, 1997

1995
Static and Dynamic Algorithms for k-Point Clustering Problems.
J. Algorithms, 1995

Sequential and parallel algorithms for the k closest pairs problem.
Int. J. Comput. Geometry Appl., 1995

Maintaining the Visibility Map of Spheres While Moving the Viewpoint on a Circle at Infinity.
Algorithmica, 1995

1994
Using Persistent Data Structures for Adding Range Restrictions to Searching Problems.
ITA, 1994

An Animation of a Fixed-Radius All-Nearest-Neighbors Algorithm.
Proceedings of the Tenth Annual Symposium on Computational Geometry, 1994

1993
Distanz- und Suchprobleme in der algorithmischen Geometrie und Anwendungen in der Bioinformatik.
PhD thesis, 1993

An optimal construction method for generalized convex layers.
Int. J. Comput. Geometry Appl., 1993

Static and Dynamic Algorithms for k-Point Clustering Problems.
Proceedings of the Algorithms and Data Structures, Third Workshop, 1993

1992
Maintaining the Visibility Map of Spheres while Moving the Viewpoint on a Circle at Infinity.
Proceedings of the Algorithm Theory, 1992

Enumerating the k Closest Pairs Optimally
Proceedings of the 33rd Annual Symposium on Foundations of Computer Science, 1992

1991
An Optimal Construction Method for Generalized Convex Layers.
Proceedings of the ISA '91 Algorithms, 1991


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