Chengze Shen

According to our database, Chengze Shen authored at least 6 papers between 2022 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

EMMA: a new method for computing multiple sequence alignments given a constraint subset alignment.

Chengze Shen, Baqiao Liu, Kelly P. Williams, Tandy J. Warnow

Algorithms Mol. Biol., December, 2023

UPP2: fast and accurate alignment of datasets with fragmentary sequences.

Minhyuk Park, Stefan Ivanovic, Gillian Chu, Chengze Shen, Tandy J. Warnow

Bioinform., January, 2023

BATCH-SCAMPP: Scaling Phylogenetic Placement Methods to Place Many Sequences (Abstract).

Eleanor Wedell, Chengze Shen, Tandy J. Warnow

Proceedings of the 23rd International Workshop on Algorithms in Bioinformatics, 2023

EMMA: Adding Sequences into a Constraint Alignment with High Accuracy and Scalability (Abstract).

Chengze Shen, Baqiao Liu, Kelly P. Williams, Tandy J. Warnow

Proceedings of the 23rd International Workshop on Algorithms in Bioinformatics, 2023

2022

WITCH: Improved Multiple Sequence Alignment Through Weighted Consensus Hidden Markov Model Alignment.

Chengze Shen, Minhyuk Park, Tandy J. Warnow

J. Comput. Biol., 2022

MAGUS+eHMMs: improved multiple sequence alignment accuracy for fragmentary sequences.

Chengze Shen, Paul Zaharias, Tandy J. Warnow

Bioinform., 2022