Chengze Shen

According to our database, Chengze Shen authored at least 11 papers between 2022 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2026

Styles + Persona-plug = Customized LLMs.

Yutong Song, Jiang Wu, Shaofan Yuan, Chengze Shen, Jian Wang, Amir M. Rahmani, Nikil D. Dutt, Yu Wang

CoRR, January, 2026

CARD: Cluster-level Adaptation with Reward-guided Decoding for Personalized Text Generation.

Yutong Song, Jiang Wu, Weijia Zhang, Chengze Shen, Shaofan Yuan, Weitao Lu, Jian Wang, Amir Rahmani, Nikil Dutt, Yu Wang

CoRR, January, 2026

2025

BSCAMPP: Batch-Scaled Phylogenetic Placement on Large Trees.

Eleanor Wedell, Chengze Shen, Tandy J. Warnow

IEEE Trans. Comput. Biol. Bioinform., 2025

TIPP3 and TIPP3-fast: Improved abundance profiling in metagenomics.

Chengze Shen, Eleanor Wedell, Mihai Pop, Tandy J. Warnow

PLoS Comput. Biol., 2025

Species detection for microbiomes with TIPP-SD.

Chengze Shen, Eleanor Wedell, Mihai Pop, Tandy J. Warnow

Proceedings of the 16th ACM International Conference on Bioinformatics, 2025

2023

EMMA: a new method for computing multiple sequence alignments given a constraint subset alignment.

Chengze Shen, Baqiao Liu, Kelly P. Williams, Tandy J. Warnow

Algorithms Mol. Biol., December, 2023

UPP2: fast and accurate alignment of datasets with fragmentary sequences.

Minhyuk Park, Stefan Ivanovic, Gillian Chu, Chengze Shen, Tandy J. Warnow

Bioinform., January, 2023

BATCH-SCAMPP: Scaling Phylogenetic Placement Methods to Place Many Sequences (Abstract).

Eleanor Wedell, Chengze Shen, Tandy J. Warnow

Proceedings of the 23rd International Workshop on Algorithms in Bioinformatics, 2023

EMMA: Adding Sequences into a Constraint Alignment with High Accuracy and Scalability (Abstract).

Chengze Shen, Baqiao Liu, Kelly P. Williams, Tandy J. Warnow

Proceedings of the 23rd International Workshop on Algorithms in Bioinformatics, 2023

2022

WITCH: Improved Multiple Sequence Alignment Through Weighted Consensus Hidden Markov Model Alignment.

Chengze Shen, Minhyuk Park, Tandy J. Warnow

J. Comput. Biol., 2022

MAGUS+eHMMs: improved multiple sequence alignment accuracy for fragmentary sequences.

Chengze Shen, Paul Zaharias, Tandy J. Warnow

Bioinform., 2022