According to our database1, Chris Bailey-Kellogg authored at least 62 papers between 1996 and 2021.
Legend:Book In proceedings Article PhD thesis Other
J. Chem. Inf. Model., 2021
Learning context-aware structural representations to predict antigen and antibody binding interfaces.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
Balancing sensitivity and specificity in distinguishing TCR groups by CDR sequence similarity.
BMC Bioinform., 2019
DisruPPI: structure-based computational redesign algorithm for protein binding disruption.
Proceedings of the Encyclopedia of GIS., 2017
OCoM-SOCoM: Combinatorial Mutagenesis Library Design Optimally Combining Sequence and Structure Information.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016
Mapping the Pareto Optimal Design Space for a Functionally Deimmunized Biotherapeutic Candidate.
PLoS Comput. Biol., 2015
Machine Learning Methods Enable Predictive Modeling of Antibody Feature: Function Relationships in RV144 Vaccinees.
PLoS Comput. Biol., 2015
Learning Sequence Determinants of Protein: Protein Interaction Specificity with Sparse Graphical Models.
J. Comput. Biol., 2015
Development and validation of an epitope prediction tool for swine (PigMatrix) based on the pocket profile method.
BMC Bioinform., 2015
Integrated assessment of predicted MHC binding and cross-conservation with self reveals patterns of viral camouflage.
BMC Bioinform., 2014
IEEE ACM Trans. Comput. Biol. Bioinform., 2013
J. Comput. Chem., 2013
Simultaneous determination of subunit and complex structures of symmetric homo-oligomers from ambiguous NMR data.
Proceedings of the ACM Conference on Bioinformatics, 2013
Response to 'Comments on "MMFPh: A Maximal Motif Finder for Phosphoproteomics Datasets"'.
Proceedings of the Research in Computational Molecular Biology, 2012
Immunoinformatic analysis of Chinese hamster ovary (CHO) protein contaminants in therapeutic protein formulations.
Proceedings of the ACM International Conference on Bioinformatics, 2012
A Geometric Arrangement Algorithm for Structure Determination of Symmetric Protein Homo-Oligomers from NOEs and RDCs.
J. Comput. Biol., 2011
Optimization of Therapeutic proteins to Delete T-Cell epitopes while Maintaining Beneficial Residue Interactions.
J. Bioinform. Comput. Biol., 2011
BMC Bioinform., 2011
Using physicochemical properties of amino acids to induce graphical models of residue couplings.
Proceedings of the Tenth International Workshop on Data Mining in Bioinformatics, 2011
Protein Fragment Swapping: A Method for Asymmetric, Selective Site-Directed Recombination.
J. Comput. Biol., 2010
Characterizing the Space of interatomic Distance Distribution Functions Consistent with Solution Scattering Data.
J. Bioinform. Comput. Biol., 2010
BMC Bioinform., 2010
IEEE ACM Trans. Comput. Biol. Bioinform., 2009
Algorithms for Joint Optimization of Stability and Diversity in Planning Combinatorial Libraries of Chimeric Proteins.
J. Comput. Biol., 2009
Proceedings of the Encyclopedia of GIS., 2008
IEEE ACM Trans. Comput. Biol. Bioinform., 2008
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008
Hypergraph Model of Multi-Residue Interactions in Proteins: Sequentially-Constrained Partitioning Algorithms for Optimization of Site-Directed Protein Recombination.
J. Comput. Biol., 2007
Structure Discovery from Massive Spatial Data Sets Using Intelligent Simulation Tools.
Proceedings of the Computational Discovery of Scientific Knowledge, 2007
A Hierarchical Grow-and-Match Algorithm for Backbone Resonance Assignments Given 3D Structure.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007
An efficient randomized algorithm for contact-based NMR backbone resonance assignment.
Extended Abstract: Structure Determination of Symmetric Protein Complexes by a Complete Search of Symmetry Configuration Space Using NMR Distance Restraints.
Proceedings of the Algorithmic Foundation of Robotics VII, 2006
Proceedings of the 2005 SIAM International Conference on Data Mining, 2005
Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005
AI Mag., 2004
Proceedings of the Biocomputing 2004, 2004
Proceedings of the Nineteenth National Conference on Artificial Intelligence, 2004
Physics-based encapsulation in embedded software for distributed sensing and control applications.
Proceedings of the IEEE, 2003
Proceedings of the IJCAI-03, 2003
Proceedings of the 19th International Conference on Software Maintenance (ICSM 2003), 2003
J. Comput. Biol., 2001
Influence-based model decomposition for reasoning about spatially distributed physical systems.
Artif. Intell., 2001
Ambiguity-Directed Sampling for Qualitative Analysis of Sparse Data from Spatially-Distributed Physical Systems.
Proceedings of the Seventeenth International Joint Conference on Artificial Intelligence, 2001
Proceedings of the 2001 IEEE International Conference on Robotics and Automation, 2001
The NOESY Jigsaw: Automated Protein Secondary Structure and Main-Chain Assignment from Sparse, Unassigned NMR Data.
J. Comput. Biol., 2000
New Gener. Comput., 1999
Proceedings of the Sixteenth National Conference on Artificial Intelligence and Eleventh Conference on Innovative Applications of Artificial Intelligence, 1999
Qualitative Analysis of Distributed Physical Systems with Applications to Control Synthesis.
Proceedings of the Fifteenth National Conference on Artificial Intelligence and Tenth Innovative Applications of Artificial Intelligence Conference, 1998
Proceedings of the Thirteenth National Conference on Artificial Intelligence and Eighth Innovative Applications of Artificial Intelligence Conference, 1996