Dan Xie

According to our database, Dan Xie authored at least 9 papers between 2005 and 2014.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2014

Comparative analysis of regulatory information and circuits across distant species Open.

Alan P. Boyle, Carlos L. Araya, Cathleen Brdlik, Philip Cayting, Chao Cheng, Yong Cheng, Kathryn Gardner, LaDeana W. Hillier, Judith Janette, Lixia Jiang, Dionna Kasper, Trupti Kawli, Pouya Kheradpour, Anshul Kundaje, Jingyi Jessica Li, Lijia Ma, Wei Niu, E. Jay Rehm, Joel S. Rozowsky, Matthew Slattery, Rebecca Spokony, Robert Terrell, Dionne Vafeados, Daifeng Wang, Peter Weisdepp, Yi-Chieh Wu, Dan Xie, Koon-Kiu Yan, Elise A. Feingold, Peter J. Good, Michael J. Pazin, Haiyan Huang, Peter J. Bickel, Steven E. Brenner, Valerie Reinke, Robert H. Waterston, Mark Gerstein, Kevin P. White, Manolis Kellis, Michael Snyder

Nat., 2014

2013

Understanding Variation in Transcription Factor Binding by Modeling Transcription Factor Genome-Epigenome Interactions.

Chieh-Chun Chen, Shu Xiao, Dan Xie, Xiaoyi Cao, Chun-Xiao Song, Ting Wang, Chuan He, Sheng Zhong

PLoS Comput. Biol., 2013

2011

Towards an Evolutionary Model of Transcription Networks.

Dan Xie, Chieh-Chun Chen, Xin He, Xiaoyi Cao, Sheng Zhong

PLoS Comput. Biol., 2011

Mapping personal functional data to personal genomes.

Marcelo Rivas-Astroza, Dan Xie, Xiaoyi Cao, Sheng Zhong

Bioinform., 2011

2010

Modeling Co-Expression across Species for Complex Traits: Insights to the Difference of Human and Mouse Embryonic Stem Cells.

Jun Cai, Dan Xie, Zhewen Fan, Hiram Chipperfield, John Marden, Wing H. Wong, Sheng Zhong

PLoS Comput. Biol., 2010

2009

Dissecting Early Differentially Expressed Genes in a Mixture of Differentiating Embryonic Stem Cells.

Feng Hong, Fang Fang, Xuming He, Xiaoyi Cao, Hiram Chipperfield, Dan Xie, Wing Hung Wong, Huck H. Ng, Sheng Zhong

PLoS Comput. Biol., 2009

2007

TagSmart: analysis and visualization for yeast mutant fitness data measured by tag microarrays.

Chulyun Kim, Sangkyum Kim, Russell Dorer, Dan Xie, Jiawei Han, Sheng Zhong

BMC Bioinform., 2007

Gene Ontology analysis in multiple gene clusters under multiple hypothesis testing framework.

Sheng Zhong, Dan Xie

Artif. Intell. Medicine, 2007

2005

LOCSVMPSI: a web server for subcellular localization of eukaryotic proteins using SVM and profile of PSI-BLAST.

Dan Xie, Ao Li, Minghui Wang, Zhewen Fan, Huanqing Feng

Nucleic Acids Res., 2005