Jingyi Jessica Li

Orcid: 0000-0002-9288-5648

According to our database1, Jingyi Jessica Li authored at least 22 papers between 2012 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.



In proceedings 
PhD thesis 


Online presence:

On csauthors.net:


A Python Package <i>itca</i> for Information-Theoretic Classification Accuracy: A Criterion That Guides Data-Driven Combination of Ambiguous Outcome Labels in Multiclass Classification.
J. Comput. Biol., November, 2023

Information-theoretic Classification Accuracy: A Criterion that Guides Data-driven Combination of Ambiguous Outcome Labels in Multi-class Classification.
J. Mach. Learn. Res., 2022

Simulating Single-Cell Gene Expression Count Data with Preserved Gene Correlations by scDesign2.
J. Comput. Biol., 2022

Hierarchical Neyman-Pearson Classification for Prioritizing Severe Disease Categories in COVID-19 Patient Data.
CoRR, 2022

scSampler: fast diversity-preserving subsampling of large-scale single-cell transcriptomic data.
Bioinform., 2022

Single-cell generalized trend model (scGTM): a flexible and interpretable model of gene expression trend along cell pseudotime.
Bioinform., 2022

Identifying the combinatorial control of signal-dependent transcription factors.
PLoS Comput. Biol., 2021

A flexible model-free prediction-based framework for feature ranking.
J. Mach. Learn. Res., 2021

Bipartite tight spectral clustering (BiTSC) algorithm for identifying conserved gene co-clusters in two species.
Bioinform., 2021

scPNMF: sparse gene encoding of single cells to facilitate gene selection for targeted gene profiling.
Bioinform., 2021

RAD: a web application to identify region associated differentially expressed genes.
Bioinform., 2021

Statistical Hypothesis Testing versus Machine Learning Binary Classification: Distinctions and Guidelines.
Patterns, 2020

Bridging Cost-sensitive and Neyman-Pearson Paradigms for Asymmetric Binary Classification.
CoRR, 2020

Matched Bipartite Block Model with Covariates.
J. Mach. Learn. Res., 2019

Word and Sentence Embedding Tools to Measure Semantic Similarity of Gene Ontology Terms by Their Definitions.
J. Comput. Biol., 2019

A statistical simulator scDesign for rational scRNA-seq experimental design.
Bioinform., 2019

Modeling and analysis of RNA-seq data: a review from a statistical perspective.
Quant. Biol., 2018

Hybrid Statistical and Mechanistic Mathematical Model Guides Mobile Health Intervention for Chronic Pain.
J. Comput. Biol., 2017

NMFP: a non-negative matrix factorization based preselection method to increase accuracy of identifying mRNA isoforms from RNA-seq data.
BMC Genom., 2016

Epigenome overlap measure (EPOM) for comparing tissue/cell types based on chromatin states.
BMC Genom., 2016

Comparative analysis of regulatory information and circuits across distant species Open.
Nat., 2014

Biclustering of Linear Patterns In Gene Expression Data.
J. Comput. Biol., 2012