Daniel C. Zielinski

According to our database, Daniel C. Zielinski authored at least 7 papers between 2012 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Inferred regulons are consistent with regulator binding sequences in E. coli.

Sizhe Qiu, Xinlong Wan, Yueshan Liang, Cameron R. Lamoureux, Amir Akbari, Bernhard O. Palsson, Daniel C. Zielinski

PLoS Comput. Biol., January, 2024

2021

MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics.

Zachary B. Haiman, Daniel C. Zielinski, Yuko Koike, James T. Yurkovich, Bernhard O. Palsson

PLoS Comput. Biol., 2021

2016

Evaluation of rate law approximations in bottom-up kinetic models of metabolism.

Bin Du, Daniel C. Zielinski, Erol S. Kavvas, Andreas Dräger, Justin Tan, Zhen Zhang, Kayla E. Ruggiero, Garri A. Arzumanyan, Bernhard O. Palsson

BMC Syst. Biol., 2016

2015

Using metabolic network reconstructions to analyze complex data sets.

Daniel C. Zielinski

PhD thesis, 2015

SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks.

Andreas Dräger, Daniel C. Zielinski, Roland Keller, Matthias Rall, Johannes Eichner, Bernhard O. Palsson, Andreas Zell

BMC Syst. Biol., 2015

2014

A Systems Approach to Predict Oncometabolites via Context-Specific Genome-Scale Metabolic Networks.

Hojung Nam, Miguel Campodonico, Aarash Bordbar, Daniel R. Hyduke, Sangwoo Kim, Daniel C. Zielinski, Bernhard O. Palsson

PLoS Comput. Biol., 2014

2012

Predicting outcomes of steady-state ¹³C isotope tracing experiments using Monte Carlo sampling.

Jan Schellenberger, Daniel C. Zielinski, Wing Choi, Sunthosh Madireddi, Vasiliy Portnoy, David A. Scott, Jennifer L. Reed, Andrei Osterman, Bernhard Ø. Palsson

BMC Syst. Biol., 2012