Daniel R. Hyduke

According to our database, Daniel R. Hyduke authored at least 9 papers between 2010 and 2019.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2019

TGx-DDI, a Transcriptomic Biomarker for Genotoxicity Hazard Assessment of Pharmaceuticals and Environmental Chemicals.

Heng-Hong Li, Carole L. Yauk, Renxiang Chen, Daniel R. Hyduke, Andrew Williams, Roland Frötschl, Heidrun Ellinger-Ziegelbauer, Syril Pettit, Jiri Aubrecht, Albert J. Fornace Jr.

Frontiers Big Data, 2019

2014

A Systems Approach to Predict Oncometabolites via Context-Specific Genome-Scale Metabolic Networks.

Hojung Nam, Miguel Campodonico, Aarash Bordbar, Daniel R. Hyduke, Sangwoo Kim, Daniel C. Zielinski, Bernhard O. Palsson

PLoS Comput. Biol., 2014

2013

Identifying radiation exposure biomarkers from mouse blood transcriptome.

Daniel R. Hyduke, Evagelia C. Laiakis, Heng-Hong Li, Albert J. Fornace Jr.

Int. J. Bioinform. Res. Appl., 2013

COBRApy: COnstraints-Based Reconstruction and Analysis for Python.

Ali Ebrahim, Joshua A. Lerman, Bernhard Ø. Palsson, Daniel R. Hyduke

BMC Syst. Biol., 2013

GIM³E: condition-specific models of cellular metabolism developed from metabolomics and expression data.

Brian J. Schmidt, Ali Ebrahim, Thomas O. Metz, Joshua N. Adkins, Bernhard Ø. Palsson, Daniel R. Hyduke

Bioinform., 2013

2012

Session introduction.

Jason E. McDermott, Pascal Braun, Richard Bonneau, Daniel R. Hyduke

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

2011

A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2.

Ines Thiele, Daniel R. Hyduke, Benjamin Steeb, Guy Fankam, Douglas K. Allen, Susanna Bazzani, Pep Charusanti, Feng-Chi Chen, Ronan M. T. Fleming, Chao A. Hsiung, Sigrid C. J. De Keersmaecker, Yu-Chieh Liao, Kathleen Marchal, Monica L. Mo, Emre Özdemir, Anu Raghunathan, Jennifer L. Reed, Sook-Il Shin, Sara Sigurbjörnsdóttir, Jonas Steinmann, Suresh Sudarsan, Neil Swainston, Inge M. Thijs, Karsten Zengler, Bernhard O. Palsson, Joshua N. Adkins, Dirk Bumann

BMC Syst. Biol., 2011

An experimentally-supported genome-scale metabolic network reconstruction for Yersinia pestis CO92.

Pep Charusanti, Sadhana Chauhan, Kathleen McAteer, Joshua A. Lerman, Daniel R. Hyduke, Vladimir L. Motin, Charles Ansong, Joshua N. Adkins, Bernhard O. Palsson

BMC Syst. Biol., 2011

2010

Trimming of mammalian transcriptional networks using network component analysis.

Linh M. Tran, Daniel R. Hyduke, James C. Liao

BMC Bioinform., 2010