Daniel McDonald

Orcid: 0000-0003-0876-9060

According to our database1, Daniel McDonald authored at least 31 papers between 1997 and 2023.

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Bibliography

2023
Testing GitHub projects on custom resources using unprivileged Kubernetes runners.
Proceedings of the Practice and Experience in Advanced Research Computing, 2023

2022
Applications and Comparison of Dimensionality Reduction Methods for Microbiome Data.
Frontiers Bioinform., 2022

2021
Accelerating Key Bioinformatics Tasks 100-fold by Improving Memory Access.
Proceedings of the PEARC '21: Practice and Experience in Advanced Research Computing, 2021

Enabling microbiome research on personal devices.
Proceedings of the 17th IEEE International Conference on eScience, 2021

Galileo: Citizen-led Experimentation Using a Social Computing System.
Proceedings of the CHI '21: CHI Conference on Human Factors in Computing Systems, 2021

2020
Porting and optimizing UniFrac for GPUs.
CoRR, 2020

Porting and optimizing UniFrac for GPUs: Reducing microbiome analysis runtimes by orders of magnitude.
Proceedings of the PEARC '20: Practice and Experience in Advanced Research Computing, 2020

Competitive Analysis with Graph Embedding on Patent Networks.
Proceedings of the 22nd IEEE Conference on Business Informatics, 2020

2017
Minimax Density Estimation for Growing Dimension.
Proceedings of the 20th International Conference on Artificial Intelligence and Statistics, 2017

2016
When Deceitful Chats Look Truthful.
J. Comput. Inf. Syst., 2016

2014
Hidden in plain sight: low-literacy adults in a developed country overcoming social and educational challenges through mobile learning support tools.
Pers. Ubiquitous Comput., 2014

2013
Automorphism Groups of Countably Categorical Linear Orders are Extremely Amenable.
Order, 2013

2012
Tale of two studies: challenges in field research with low-literacy adult learners in a developed country.
Proceedings of the CHI Conference on Human Factors in Computing Systems, 2012

2011
Boulder ALignment Editor (ALE): a web-based RNA alignment tool.
Bioinform., 2011

"Showing off" your mobile device: adult literacy learning in the classroom and beyond.
Proceedings of the 13th Conference on Human-Computer Interaction with Mobile Devices and Services, 2011

2010
ALEX<sup>©</sup>: a mobile adult literacy experiential learning application.
Int. J. Mob. Learn. Organisation, 2010

ALEX: mobile language assistant for low-literacy adults.
Proceedings of the 12th Conference on Human-Computer Interaction with Mobile Devices and Services, 2010

2009
Ensemble dispatching on an IBM Blue Gene/L for a bioinformatics knowledge environment.
Proceedings of the 2nd Workshop on Many-Task Computing on Grids and Supercomputers, 2009

2008
Comparison of methods for estimating the nucleotide substitution matrix.
BMC Bioinform., 2008

2006
Summary in context: Searching versus browsing.
ACM Trans. Inf. Syst., 2006

Aggregating Automatically Extracted Regulatory Pathway Relations.
IEEE Trans. Inf. Technol. Biomed., 2006

2005
Linking Ontological Resources Using Aggregatable Substance Identifiers to Organize Extracted Relations.
Proceedings of the Biocomputing 2005, 2005

Transforming Open-Source Documents to Terror Networks: The Arizona TerrorNet.
Proceedings of the AI Technologies for Homeland Security, 2005

2004
EBizPort: Collecting and analyzing business intelligence information.
J. Assoc. Inf. Sci. Technol., 2004

Extracting gene pathway relations using a hybrid grammar: the Arizona Relation Parser.
Bioinform., 2004

2003
Genescene: Biomedical Text And Data Mining.
Proceedings of the ACM/IEEE 2003 Joint Conference on Digital Libraries (JCDL 2003), 2003

2002
Using sentence-selection heuristics to rank text segments in TXTRACTOR.
Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2002

NanoPort: a web portal for nanoscale science and technology.
Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2002

Comparison of two approaches to building a vertical search tool: a case study in the nanotechnology domain.
Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2002

1999
Determining Protein Structure using the Distance Geometry Program APA.
Comput. Chem., 1999

1997
Sampling Properties of the Alternating Projection Distance Geometry Algorithm Applied to Unconstrained Polypeptide Chains.
Comput. Chem., 1997


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