Jason E. McDermott

According to our database1, Jason E. McDermott authored at least 34 papers between 2003 and 2021.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.



In proceedings 
PhD thesis 


On csauthors.net:


Hypergraph models of biological networks to identify genes critical to pathogenic viral response.
BMC Bioinform., 2021

Ten Simple Rules to becoming a principal investigator.
PLoS Comput. Biol., 2020

Unified feature association networks through integration of transcriptomic and proteomic data.
PLoS Comput. Biol., 2019

Fast and Scalable Implementations of Influence Maximization Algorithms.
Proceedings of the 2019 IEEE International Conference on Cluster Computing, 2019

Ten simple rules for drawing scientific comics.
PLoS Comput. Biol., 2018

The effect of inhibition of PP1 and TNFα signaling on pathogenesis of SARS coronavirus.
BMC Syst. Biol., 2016

<i>Biocellion</i>: accelerating computer simulation of multicellular biological system models.
Bioinform., 2014

Promises and challenges in analysis of biological big data.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

Reproducibility: Two more red flags for suspect work.
Nat., 2013

Trelliscope: A system for detailed visualization in the deep analysis of large complex data.
Proceedings of the IEEE Symposium on Large-Scale Data Analysis and Visualization, 2013

Modeling Dynamic Regulatory Processes in Stroke.
PLoS Comput. Biol., 2012

Suppressed Expression of T-Box Transcription Factors Is Involved in Senescence in Chronic Obstructive Pulmonary Disease.
PLoS Comput. Biol., 2012

An Adaptive Coarse Graining Method for Signal Transduction in Three Dimensions.
Fundam. Informaticae, 2012

Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesis.
BMC Syst. Biol., 2012

Session introduction.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

Modeling Emergence in Neuroprotective Regulatory Networks.
Proceedings of the Complex Sciences - Second International Conference, 2012

Enriching regulatory networks by bootstrap learning using optimised GO-based gene similarity and gene links mined from PubMed abstracts.
Int. J. Comput. Biol. Drug Des., 2011

Systems analysis of multiple regulator perturbations allows discovery of virulence factors in Salmonella.
BMC Syst. Biol., 2011

Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems.
BMC Syst. Biol., 2011

Defining the Players in Higher-Order Networks: Predictive Modeling for Reverse Engineering Functional Influence Networks.
Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011

Evolutionary Transients in the Rice Transcriptome.
Genom. Proteom. Bioinform., 2010

Learning biological networks via bootstrapping with optimized go-based gene similarity.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

An integrated approach to predictive genomic analytics.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

Bottlenecks and Hubs in Inferred Networks Are Important for Virulence in <i>Salmonella typhimurium</i>.
J. Comput. Biol., 2009

An analysis pipeline for the inference of protein-protein interaction networks.
Int. J. Data Min. Bioinform., 2009

Using the gene ontology to enrich biological pathways.
Int. J. Comput. Biol. Drug Des., 2009

A Bayesian Integration Model of High-Throughput Proteomics and Metabolomics Data for Improved Early Detection of Microbial Infections.
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

Investigating political and demographic factors in crowd based interfaces.
Proceedings of the 21st Australasian Computer-Human Interaction Conference, 2009

SEBINI-CABIN: An Analysis Pipeline for Biological Network Inference, with a Case Study in Protein-Protein Interaction Network Reconstruction.
Proceedings of the Sixth International Conference on Machine Learning and Applications, 2007

INTEGRATOR: interactive graphical search of large protein interactomes over the Web.
BMC Bioinform., 2006

BIOVERSE: enhancements to the framework for structural, functional and contextual modeling of proteins and proteomes.
Nucleic Acids Res., 2005

Functional annotation from predicted protein interaction networks.
Bioinform., 2005

An enhanced Java graph applet interface for visualizing interactomes.
Bioinform., 2005

Bioverse: functional, structural and contextual annotation of proteins and proteomes.
Nucleic Acids Res., 2003