Daniele Santoni

According to our database, Daniele Santoni authored at least 14 papers between 2008 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

TRANSPARENT: a Python tool for designing transcription factor regulatory networks.

Carlo Derelitto, Daniele Santoni

Soft Comput., May, 2023

Evaluating homophily in networks via <i>HONTO</i> (HOmophily Network TOol): a case study of chromosomal interactions in human PPI networks.

Nicola Apollonio, Daniel Blankenberg, Fabio Cumbo, Paolo Giulio Franciosa, Daniele Santoni

Bioinform., January, 2023

Predicting Transcription Factor Binding Sites using Transformer based Capsule Network.

Nimisha Ghosh, Daniele Santoni, Indrajit Saha, Giovanni Felici

CoRR, 2023

2021

On function homophily of microbial Protein-Protein Interaction Networks.

Nicola Apollonio, Paolo Giulio Franciosa, Daniele Santoni

CoRR, 2021

The impact of flanking sequence features on DNA CpG methylation.

Daniele Santoni

Comput. Biol. Chem., 2021

2018

A Content-Based Retrieval Framework for Whole Metagenome Sequencing Samples.

Duygu Dede Sener, Daniele Santoni, Giovanni Felici, Hasan Ogul

J. Integr. Bioinform., 2018

2016

Optimal discretization and selection of features by association rates of joint distributions.

Daniele Santoni, Emanuel Weitschek, Giovanni Felici

RAIRO Oper. Res., 2016

Automatic Detection of Words Associations in Texts Based on Joint Distribution of Words Occurrences.

Daniele Santoni, Elaheh Pourabbas

Comput. Intell., 2016

2014

Correction to Modules Identification in Protein Structures: The Topological and Geometrical Solutions.

Setareh Tasdighian, Luisa Di Paola, Micol De Ruvo, Paola Paci, Daniele Santoni, Pasquale Palumbo, Giampiero Mei, Almerinda Di Venere, Alessandro Giuliani

J. Chem. Inf. Model., 2014

Modules Identification in Protein Structures: The Topological and Geometrical Solutions.

Setareh Tasdighian, Luisa Di Paola, Micol De Ruvo, Paola Paci, Daniele Santoni, Pasquale Palumbo, Giampiero Mei, Almerinda Di Venere, Alessandro Giuliani

J. Chem. Inf. Model., 2014

Multi-scale Simulation of T Helper Lymphocyte Differentiation.

Paolo Tieri, Vinca Prana, Teresa Colombo, Daniele Santoni, Filippo Castiglione

Proceedings of the Advances in Bioinformatics and Computational Biology, 2014

2012

Proteins as Sponges: A Statistical Journey along Protein Structure Organization Principles.

Luisa Di Paola, Paola Paci, Daniele Santoni, Micol De Ruvo, Alessandro Giuliani

J. Chem. Inf. Model., 2012

2010

Combining Network Modeling and Gene Expression Microarray Analysis to Explore the Dynamics of Th1 and Th2 Cell Regulation.

Marco Pedicini, Fredrik Barrenäs, Trevor Clancy, Filippo Castiglione, Eivind Hovig, Kartiek Kanduri, Daniele Santoni, Mikael Benson

PLoS Comput. Biol., 2010

2008

Implementation of a regulatory gene network to simulate the TH1/2 differentiation in an agent-based model of hypersensitivity reactions.

Daniele Santoni, Marco Pedicini, Filippo Castiglione

Bioinform., 2008