Drena Dobbs

Orcid: 0000-0003-4404-9554

According to our database1, Drena Dobbs authored at least 41 papers between 1994 and 2019.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2019
The Gene Sculpt Suite: a set of tools for genome editing.
Nucleic Acids Res., 2019

2017
Template-based protein-protein docking exploiting pairwise interfacial residue restraints.
Briefings Bioinform., 2017

2016
A Motif-Based Method for Predicting Interfacial Residues in Both the RNA and Protein Components of Protein-RNA Complexes.
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

Session Introduction.
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

2014
An analysis of conformational changes upon RNA-protein binding.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2012
Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art.
BMC Bioinform., 2012

Predicting protein-protein interface residues using local surface structural similarity.
BMC Bioinform., 2012

Predicting protective bacterial antigens using random forest classifiers.
Proceedings of the ACM International Conference on Bioinformatics, 2012

2011
Predicting MHC-II Binding Affinity Using Multiple Instance Regression.
IEEE ACM Trans. Comput. Biol. Bioinform., 2011

PRIDB: a protein-RNA interface database.
Nucleic Acids Res., 2011

HomPPI: A Class of Sequence Homology Based Protein-Protein Interface Prediction Methods.
BMC Bioinform., 2011

Predicting RNA-Protein Interactions Using Only Sequence Information.
BMC Bioinform., 2011

Improving protein-RNA interface prediction by combining sequence homology based method with a naive Bayes classifier: preliminary results.
Proceedings of the ACM International Conference on Bioinformatics, 2011

Ranking docked models of protein-protein complexes using predicted partner-specific protein-protein interfaces: a preliminary study.
Proceedings of the ACM International Conference on Bioinformatics, 2011

2010
ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool.
Nucleic Acids Res., 2010

Struct-NB: predicting protein-RNA binding sites using structural features.
Int. J. Data Min. Bioinform., 2010

Predicting success of oligomerized pool engineering (OPEN) for zinc finger target site sequences.
BMC Bioinform., 2010

2009
Zinc Finger Database (ZiFDB): a repository for information on C2H2 zinc fingers and engineered zinc-finger arrays.
Nucleic Acids Res., 2009

Mixture of experts models to exploit global sequence similarity on biomolecular sequence labeling.
BMC Bioinform., 2009

2008
Striking Similarities in Diverse Telomerase Proteins Revealed by Combining Structure Prediction and Machine Learning Approaches.
Proceedings of the Biocomputing 2008, 2008

Predicting Protective Linear B-Cell Epitopes Using Evolutionary Information.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

Using Global Sequence Similarity to Enhance Biological Sequence Labeling.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2007
RNABindR: a server for analyzing and predicting RNA-binding sites in proteins.
Nucleic Acids Res., 2007

Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool.
Nucleic Acids Res., 2007

Glycosylation site prediction using ensembles of Support Vector Machine classifiers.
BMC Bioinform., 2007

Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach.
BMC Bioinform., 2007

Analysis of Protein Protein Dimeric Interfaces.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

Assessing the Performance of Macromolecular Sequence Classifiers.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006
Predicting DNA-binding sites of proteins from amino acid sequence.
BMC Bioinform., 2006

2005
Identifying Interaction Sites in "Recalcitrant" Proteins: Predicted Protein and Rna Binding Sites in Rev Proteins of Hiv-1 and Eiav Agree with Experimental Data
CoRR, 2005

Information Integration and Knowledge Acquisition from Semantically Heterogeneous Biological Data Sources.
Proceedings of the Data Integration in the Life Sciences, Second InternationalWorkshop, 2005

Information Integration from Semantically Heterogeneous Biological Data Sources.
Proceedings of the 16th International Workshop on Database and Expert Systems Applications (DEXA 2005), 2005

2004
Identification of interface residues in protease-inhibitor and antigen-antibody complexes: a support vector machine approach.
Neural Comput. Appl., 2004

Predicting binding sites of hydrolase-inhibitor complexes by combining several methods.
BMC Bioinform., 2004

A two-stage classifier for identification of protein-protein interface residues.
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004

2003
Automated data-driven discovery of motif-based protein function classifiers.
Inf. Sci., 2003

2002
Data-Driven Discovery of Protein Function Classifiers: Decision Trees Based on MEME Motifs outperform PROSITE Patterns and Profiles on Peptidase Families.
Proceedings of the 6th Joint Conference on Information Science, 2002

Discovering Protein Function Classification Rules from Reduced Alphabet Representations of Protein Sequences.
Proceedings of the 6th Joint Conference on Information Science, 2002

1999
Data-driven theory refinement algorithms for bioinformatics.
Proceedings of the International Joint Conference Neural Networks, 1999

Data-Driven Theory Refinement Using <i>KBDistAl</i>.
Proceedings of the Advances in Intelligent Data Analysis, Third International Symposium, 1999

1994
Modular sequence elements associated with origin regions in eukaryotic chromosomal DNA.
Nucleic Acids Res., 1994


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