Taner Z. Sen

According to our database, Taner Z. Sen authored at least 26 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium.

Jennifer L. Clarke, Laurel D. Cooper, Monica F. Poelchau, Tanya Z. Berardini, Justin Elser, Andrew D. Farmer, Stephen P. Ficklin, Sunita Kumari, Marie-Angélique Laporte, Rex T. Nelson, Rie Sadohara, Peter Selby, Anne E. Thessen, Brandon Whitehead, Taner Z. Sen

Database J. Biol. Databases Curation, 2023

2022

Predicting Tissue-Specific mRNA and Protein Abundance in Maize: A Machine Learning Approach.

Kyoung Tak Cho, Taner Z. Sen, Carson M. Andorf

Frontiers Artif. Intell., 2022

G4Boost: a machine learning-based tool for quadruplex identification and stability prediction.

H. Busra Cagirici, Hikmet Budak, Taner Z. Sen

BMC Bioinform., 2022

GrainGenes: a data-rich repository for small grains genetics and genomics.

Eric Yao, Victoria C. Blake, Laurel Cooper, Charlene P. Wight, Steve L. Michel, H. Busra Cagirici, Gerard R. Lazo, Clayton L. Birkett, David J. Waring, Jean-Luc Jannink, Ian H. Holmes, Amanda J. Waters, David P. Eickholt, Taner Z. Sen

Database J. Biol. Databases Curation, 2022

2021

FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences.

Sagnik Banerjee, Priyanka Bhandary, Margaret Woodhouse, Taner Z. Sen, Roger P. Wise, Carson M. Andorf

BMC Bioinform., 2021

2020

JBrowse Connect: A server API to connect JBrowse instances and users.

Eric Yao, Robert M. Buels, Lincoln Stein, Taner Z. Sen, Ian H. Holmes

PLoS Comput. Biol., 2020

The Plant Trait Ontology Links Wheat Traits for Crop Improvement and Genomics (short paper).

Laurel Cooper, Marie-Angélique Laporte, Justin Elser, Victoria Carollo Blake, Taner Z. Sen, Chris Mungall, Elizabeth Arnaud, Pankaj Jaiswal

Proceedings of the 11th International Conference on Biomedical Ontologies (ICBO) joint with the 10th Workshop on Ontologies and Data in Life Sciences (ODLS) and part of the Bolzano Summer of Knowledge (BoSK 2020), 2020

FINDER: A fully automated pipeline to FIND accurate gene structures from proteins and RNA-Seq expression data.

Sagnik Banerjee, Margaret Woodhouse, Roger P. Wise, Priyanka Bhandary, Taner Z. Sen, Carson M. Andorf

Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020

2019

MaizeGDB 2018: the maize multi-genome genetics and genomics database.

John L. Portwood II, Margaret Woodhouse, Ethalinda K. S. Cannon, Jack M. Gardiner, Lisa C. Harper, Mary L. Schaeffer, Jesse R. Walsh, Taner Z. Sen, Kyoung Tak Cho, David A. Schott, Bremen L. Braun, Miranda Dietze, Brittney Dunfee, Christine G. Elsik, Nancy Manchanda, Ed Coe, Marty Sachs, Philip Stinard, Josh Tolbert, Shane Zimmerman, Carson M. Andorf

Nucleic Acids Res., 2019

PedigreeNet: a web-based pedigree viewer for biological databases.

Bremen L. Braun, David A. Schott, John L. Portwood II, Carson M. Andorf, Taner Z. Sen

Bioinform., 2019

GrainGenes: centralized small grain resources and digital platform for geneticists and breeders.

Victoria C. Blake, Margaret Woodhouse, Gerard R. Lazo, Sarah G. Odell, Charlene P. Wight, Nicholas A Tinker, Yi Wang, Yong Q. Gu, Clayton L. Birkett, Jean-Luc Jannink, Dave E. Matthews, David L. Hane, Steve L. Michel, Eric Yao, Taner Z. Sen

Database J. Biol. Databases Curation, 2019

2018

SNPversity: a web-based tool for visualizing diversity.

David A. Schott, Abhinav G. Vinnakota, John L. Portwood II, Carson M. Andorf, Taner Z. Sen

Database J. Biol. Databases Curation, 2018

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.

Lisa C. Harper, Jacqueline D. Campbell, Ethalinda K. S. Cannon, Sook Jung, Monica Poelchau, Ramona L. Walls, Carson M. Andorf, Elizabeth Arnaud, Tanya Z. Berardini, Clayton L. Birkett, Steven B. Cannon, James D. Carson, Bradford Condon, Laurel Cooper, Nathan A. Dunn, Christine G. Elsik, Andrew D. Farmer, Stephen P. Ficklin, David M. Grant, Emily S. Grau, Nic Herndon, Zhi-Liang Hu, Jodi L. Humann, Pankaj Jaiswal, Clément Jonquet, Marie-Angélique Laporte, Pierre Larmande, Gerard R. Lazo, Fiona McCarthy, Naama Menda, Christopher J. Mungall, Monica C. Munoz-Torres, Sushma Naithani, Rex T. Nelson, Daureen Nesdill, Carissa A. Park, James M. Reecy, Leonore Reiser, Lacey-Anne Sanderson, Taner Z. Sen, Margaret Staton, Sabarinath Subramaniam, Marcela Karey Tello-Ruiz, Victor Unda, Deepak R. Unni, Liya Wang, Doreen Ware, Jill L. Wegrzyn, Jason Williams, Margaret Woodhouse, Jing Yu, Doreen Main

Database J. Biol. Databases Curation, 2018

2017

Surveying the Maize community for their diversity and pedigree visualization needs to prioritize tool development and curation.

Taner Z. Sen, Bremen L. Braun, David A. Schott, John L. Portwood II, Mary L. Schaeffer, Lisa C. Harper, Jack M. Gardiner, Ethalinda K. S. Cannon, Carson M. Andorf

Database J. Biol. Databases Curation, 2017

2016

MaizeGDB update: new tools, data and interface for the maize model organism database.

Carson M. Andorf, Ethalinda K. S. Cannon, John L. Portwood II, Jack M. Gardiner, Lisa C. Harper, Mary L. Schaeffer, Bremen L. Braun, Darwin A. Campbell, Abhinav G. Vinnakota, Venktanaga V. Sribalusu, Miranda Huerta, Kyoung Tak Cho, Kokulapalan Wimalanathan, Jacqueline D. Richter, Emily D. Mauch, Bhavani S. Rao, Scott M. Birkett, Taner Z. Sen, Carolyn J. Lawrence-Dill

Nucleic Acids Res., 2016

The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize.

Jesse R. Walsh, Mary L. Schaeffer, Peifen Zhang, Seung Yon Rhee, Julie A. Dickerson, Taner Z. Sen

BMC Syst. Biol., 2016

2014

A computational platform to maintain and migrate manual functional annotations for BioCyc databases.

Jesse R. Walsh, Taner Z. Sen, Julie A. Dickerson

BMC Syst. Biol., 2014

2011

MaizeGDB: curation and outreach go hand-in-hand.

Mary L. Schaeffer, Lisa C. Harper, Jack M. Gardiner, Carson M. Andorf, Darwin A. Campbell, Ethalinda K. S. Cannon, Taner Z. Sen, Carolyn J. Lawrence

Database J. Biol. Databases Curation, 2011

The MaizeGDB Genome Browser tutorial: one example of database outreach to biologists via video.

Lisa C. Harper, Mary L. Schaeffer, Jordan Thistle, Jack M. Gardiner, Carson M. Andorf, Darwin A. Campbell, Ethalinda K. S. Cannon, Bremen L. Braun, Scott M. Birkett, Carolyn J. Lawrence, Taner Z. Sen

Database J. Biol. Databases Curation, 2011

2010

The Locus Lookup tool at MaizeGDB: identification of genomic regions in maize by integrating sequence information with physical and genetic maps.

Carson M. Andorf, Carolyn J. Lawrence, Lisa C. Harper, Mary L. Schaeffer, Darwin A. Campbell, Taner Z. Sen

Bioinform., 2010

Choosing a genome browser for a Model Organism Database: surveying the Maize community.

Taner Z. Sen, Lisa C. Harper, Mary L. Schaeffer, Carson M. Andorf, Trent E. Seigfried, Darwin A. Campbell, Carolyn J. Lawrence

Database J. Biol. Databases Curation, 2010

2009

MaizeGDB becomes 'sequence-centric'.

Taner Z. Sen, Carson M. Andorf, Mary L. Schaeffer, Lisa C. Harper, Michael E. Sparks, Jon Duvick, Volker P. Brendel, Ethalinda K. S. Cannon, Darwin A. Campbell, Carolyn J. Lawrence

Database J. Biol. Databases Curation, 2009

2007

Consensus Data Mining (CDM) Protein Secondary Structure Prediction Server: Combining GOR V and Fragment Database Mining (FDM).

Haitao Cheng, Taner Z. Sen, Robert L. Jernigan, Andrzej Kloczkowski

Bioinform., 2007

2006

Functional clustering of yeast proteins from the protein-protein interaction network.

Taner Z. Sen, Andrzej Kloczkowski, Robert L. Jernigan

BMC Bioinform., 2006

2005

GOR V server for protein secondary structure prediction.

Taner Z. Sen, Robert L. Jernigan, Jean Garnier, Andrzej Kloczkowski

Bioinform., 2005

2004

Predicting binding sites of hydrolase-inhibitor complexes by combining several methods.

Taner Z. Sen, Andrzej Kloczkowski, Robert L. Jernigan, Changhui Yan, Vasant G. Honavar, Kai-Ming Ho, Cai-Zhuang Wang, Yungok Ihm, Haibo Cao, Xun Gu, Drena Dobbs

BMC Bioinform., 2004