Elisabeth Remy

According to our database, Elisabeth Remy authored at least 25 papers between 2001 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

From multivalued to Boolean functions: Preservation of soft nested canalization.

Elisabeth Remy, Paul Ruet

Theor. Comput. Sci., January, 2024

2023

Logical modelling of myelofibrotic microenvironment predicts dysregulated progenitor stem cell crosstalk.

Stephen P. Chapman, Estelle Duprez, Elisabeth Remy

Biosyst., September, 2023

Average Sensitivity of Nested Canalizing Multivalued Functions.

Elisabeth Remy, Paul Ruet

Proceedings of the Computational Methods in Systems Biology, 2023

2020

MultiVERSE: a multiplex and multiplex-heterogeneous network embedding approach.

Léo Pio-Lopez, Alberto Valdeolivas, Laurent Tichit, Elisabeth Remy, Anaïs Baudot

CoRR, 2020

2019

Random walk with restart on multiplex and heterogeneous biological networks.

Alberto Valdeolivas, Laurent Tichit, Claire Navarro, Sophie Perrin, Gaëlle Odelin, Nicolas Levy, Pierre Cau, Elisabeth Remy, Anaïs Baudot

Bioinform., 2019

2015

Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling.

Åsmund Flobak, Anaïs Baudot, Elisabeth Remy, Liv Thommesen, Denis Thieffry, Martin Kuiper, Astrid Lægreid

PLoS Comput. Biol., 2015

2014

Quantification of reachable attractors in asynchronous discrete dynamics.

Nuno D. Mendes, Pedro T. Monteiro, Jorge Carneiro, Elisabeth Remy, Claudine Chaouiya

CoRR, 2014

2012

Relations between gene regulatory networks and cell dynamics in Boolean models.

Gilles Didier, Elisabeth Remy

Discret. Appl. Math., 2012

2011

Dynamically consistent reduction of logical regulatory graphs.

Aurélien Naldi, Elisabeth Remy, Denis Thieffry, Claudine Chaouiya

Theor. Comput. Sci., 2011

Petri net representation of multi-valued logical regulatory graphs.

Claudine Chaouiya, Aurélien Naldi, Elisabeth Remy, Denis Thieffry

Nat. Comput., 2011

2010

Reduction of Logical Models of Regulatory Networks Yields Insight into Dynamical properties.

Claudine Chaouiya, Aurélien Naldi, Elisabeth Remy, Denis Thieffry

Proceedings of the IEEE International Conference on Control Applications, 2010

2009

A Reduction of Logical Regulatory Graphs Preserving Essential Dynamical Properties.

Aurélien Naldi, Elisabeth Remy, Denis Thieffry, Claudine Chaouiya

Proceedings of the Computational Methods in Systems Biology, 7th International Conference, 2009

2008

Petri net modelling of biological regulatory networks.

Claudine Chaouiya, Elisabeth Remy, Denis Thieffry

J. Discrete Algorithms, 2008

Graphic requirements for multistability and attractive cycles in a Boolean dynamical framework.

Elisabeth Remy, Paul Ruet, Denis Thieffry

Adv. Appl. Math., 2008

From minimal signed circuits to the dynamics of Boolean regulatory networks.

Elisabeth Remy, Paul Ruet

Proceedings of the ECCB'08 Proceedings, 2008

2007

On Differentiation and Homeostatic Behaviours of Boolean Dynamical Systems.

Elisabeth Remy, Paul Ruet

Trans. Comp. Sys. Biology, 2007

2006

From Logical Regulatory Graphs to Standard Petri Nets: Dynamical Roles and Functionality of Feedback Circuits.

Elisabeth Remy, Paul Ruet, Luis Eduardo Mendoza, Denis Thieffry, Claudine Chaouiya

Trans. Comp. Sys. Biology, 2006

Qualitative Petri Net Modelling of Genetic Networks.

Claudine Chaouiya, Elisabeth Remy, Denis Thieffry

Trans. Comp. Sys. Biology, 2006

Positive or Negative Regulatory Circuit Inference from Multilevel Dynamics.

Elisabeth Remy, Paul Ruet, Denis Thieffry

Proceedings of the Positive Systems, 2006

2005

Qualitative modelling of regulated metabolic pathways: application to the tryptophan biosynthesis in <i>E.Coli</i>.

E. Simão, Elisabeth Remy, Denis Thieffry, Claudine Chaouiya

Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005

2004

Qualitative Modelling of Genetic Networks: From Logical Regulatory Graphs to Standard Petri Nets.

Claudine Chaouiya, Elisabeth Remy, Paul Ruet, Denis Thieffry

Proceedings of the Applications and Theory of Petri Nets 2004, 2004

2003

Qualitative Analysis of Regulatory Graphs: A Computational Tool Based on a Discrete Formal Framework.

Claudine Chaouiya, Elisabeth Remy, Brigitte Mossé, Denis Thieffry

Proceedings of the Positive Systems, 2003

A description of dynamical graphs associated to elementary regulatory circuits.

Elisabeth Remy, Brigitte Mossé, Claudine Chaouiya, Denis Thieffry

Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003

2002

GeneANOVA-gene expression analysis of variance.

Gilles Didier, Pierre Brézellec, Elisabeth Remy, Alain Hénaut

Bioinform., 2002

2001

Homogenization of Elliptic Difference Operators.

Andrey Piatnitski, Elisabeth Remy

SIAM J. Math. Anal., 2001