Claudine Chaouiya

According to our database1, Claudine Chaouiya authored at least 46 papers between 2003 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
YEASTRACT+: a portal for the exploitation of global transcription regulation and metabolic model data in yeast biotechnology and pathogenesis.
Nucleic Acids Res., January, 2023

2022
Computational modelling in health and disease: highlights of the 6th annual SysMod meeting.
Bioinform., October, 2022

Addressing <i>barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology</i>.
Briefings Bioinform., 2022

2021
The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).
Bioinform., 2021

SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems.
Bioinform., 2021

Setting the basis of best practices and standards for curation and annotation of logical models in biology - highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.
Briefings Bioinform., 2021

2019
Local Negative Circuits and Cyclic Attractors in Boolean Networks with at most Five Components.
SIAM J. Appl. Dyn. Syst., 2019

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
J. Integr. Bioinform., 2019

Partial Order on the set of Boolean Regulatory Functions.
CoRR, 2019

2018
EpiLog: A software for the logical modelling of epithelial dynamics.
F1000Research, 2018

Stable States of Boolean Regulatory Networks Composed Over Hexagonal Grids.
Proceedings of SASB 2018, 2018

2016
A Modular, Qualitative Modeling of Regulatory Networks Using Petri Nets.
Proceedings of the Modeling in Systems Biology, The Petri Net Approach, 2016

Primary sex determination of placental mammals: a modelling study uncovers dynamical developmental constraints in the formation of Sertoli and granulosa cells.
BMC Syst. Biol., 2016

2015
The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1.
J. Integr. Bioinform., 2015

Cooperative development of logical modelling standards and tools with CoLoMoTo.
Bioinform., 2015

2014
A Discrete Model of <i>Drosophila</i> Eggshell Patterning Reveals Cell-Autonomous and Juxtacrine Effects.
PLoS Comput. Biol., 2014

Quantification of reachable attractors in asynchronous discrete dynamics.
CoRR, 2014

Model Checking Logical Regulatory Networks.
Proceedings of the 12th International Workshop on Discrete Event Systems, 2014

2013
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.
BMC Syst. Biol., 2013

Path2Models: large-scale generation of computational models from biochemical pathway maps.
BMC Syst. Biol., 2013

Composition and abstraction of logical regulatory modules: application to multicellular systems.
Bioinform., 2013

2012
Efficient Verification for Logical Models of Regulatory Networks.
Proceedings of the 6th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2012

Automatic Inference of Regulatory and Dynamical Properties from Incomplete Gene Interaction and Expression Data.
Proceedings of the Information Processign in Cells and Tissues, 2012

Efficient Handling of Large Signalling-Regulatory Networks by Focusing on Their Core Control.
Proceedings of the Computational Methods in Systems Biology, 2012

2011
Dynamically consistent reduction of logical regulatory graphs.
Theor. Comput. Sci., 2011

Petri net representation of multi-valued logical regulatory graphs.
Nat. Comput., 2011

Relating Formalisms for the Qualitative Modelling of Regulatory Networks.
Proceedings of the 5th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2011

2010
Diversity and Plasticity of Th Cell Types Predicted from Regulatory Network Modelling.
PLoS Comput. Biol., 2010

Introduction.
Proceedings of the Workshops of the 31st International Conference on Application and Theory of Petri Nets and Other Models of Concurrency (PETRI NETS 2010) and of the 10th International Conference on Application of Concurrency to System Design (ACSD 2010), 2010

Reduction of Logical Models of Regulatory Networks Yields Insight into Dynamical properties.
Proceedings of the IEEE International Conference on Control Applications, 2010

2009
Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance.
BMC Syst. Biol., 2009

Logical modelling of regulatory networks with GINsim 2.3.
Biosyst., 2009

A Reduction of Logical Regulatory Graphs Preserving Essential Dynamical Properties.
Proceedings of the Computational Methods in Systems Biology, 7th International Conference, 2009

2008
Petri net modelling of biological regulatory networks.
J. Discrete Algorithms, 2008

Logical modelling of the role of the Hh pathway in the patterning of the <i>Drosophila</i> wing disc.
Proceedings of the ECCB'08 Proceedings, 2008

2007
Chronique : Réseaux de Petri et modélisation en biologie moléculaire.
Tech. Sci. Informatiques, 2007

Logical modelling and analysis of the budding yeast cell cycle.
BMC Bioinform., 2007

Petri net modelling of biological networks.
Briefings Bioinform., 2007

Decision Diagrams for the Representation and Analysis of Logical Models of Genetic Networks.
Proceedings of the Computational Methods in Systems Biology, International Conference, 2007

2006
From Logical Regulatory Graphs to Standard Petri Nets: Dynamical Roles and Functionality of Feedback Circuits.
Trans. Comp. Sys. Biology, 2006

Qualitative Petri Net Modelling of Genetic Networks.
Trans. Comp. Sys. Biology, 2006

Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

2005
Qualitative modelling of regulated metabolic pathways: application to the tryptophan biosynthesis in <i>E.Coli</i>.
Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005

2004
Qualitative Modelling of Genetic Networks: From Logical Regulatory Graphs to Standard Petri Nets.
Proceedings of the Applications and Theory of Petri Nets 2004, 2004

2003
Qualitative Analysis of Regulatory Graphs: A Computational Tool Based on a Discrete Formal Framework.
Proceedings of the Positive Systems, 2003

A description of dynamical graphs associated to elementary regulatory circuits.
Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003


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