Aurélien Naldi

According to our database1, Aurélien Naldi authored at least 22 papers between 2006 and 2023.

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Bibliography

2023
Linear cuts in Boolean networks.
Nat. Comput., September, 2023

2022
BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Nucleic Acids Res., 2022

BioSimulators: a central registry of simulation engines and services for recommending specific tools.
CoRR, 2022

2021
Setting the basis of best practices and standards for curation and annotation of logical models in biology - highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.
Briefings Bioinform., 2021

LNetReduce: Tool for Reducing Linear Dynamic Networks with Separated Timescales.
Proceedings of the Computational Methods in Systems Biology, 2021

2020
Automated inference of Boolean models from molecular interaction maps using CaSQ.
Bioinform., 2020

2017
Reconstruction and signal propagation analysis of the Syk signaling network in breast cancer cells.
PLoS Comput. Biol., 2017

MaBoSS 2.0: an environment for stochastic Boolean modeling.
Bioinform., 2017

2016
Geometric analysis of pathways dynamics: Application to versatility of TGF-β receptors.
Biosyst., 2016

2015
The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1.
J. Integr. Bioinform., 2015

Cooperative development of logical modelling standards and tools with CoLoMoTo.
Bioinform., 2015

Symbolic Dynamics of Biochemical Pathways as Finite States Machines.
Proceedings of the Computational Methods in Systems Biology, 2015

2013
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.
BMC Syst. Biol., 2013

2012
Efficient Handling of Large Signalling-Regulatory Networks by Focusing on Their Core Control.
Proceedings of the Computational Methods in Systems Biology, 2012

2011
Dynamically consistent reduction of logical regulatory graphs.
Theor. Comput. Sci., 2011

Petri net representation of multi-valued logical regulatory graphs.
Nat. Comput., 2011

2010
Diversity and Plasticity of Th Cell Types Predicted from Regulatory Network Modelling.
PLoS Comput. Biol., 2010

Reduction of Logical Models of Regulatory Networks Yields Insight into Dynamical properties.
Proceedings of the IEEE International Conference on Control Applications, 2010

2009
Logical modelling of regulatory networks with GINsim 2.3.
Biosyst., 2009

A Reduction of Logical Regulatory Graphs Preserving Essential Dynamical Properties.
Proceedings of the Computational Methods in Systems Biology, 7th International Conference, 2009

2007
Decision Diagrams for the Representation and Analysis of Logical Models of Genetic Networks.
Proceedings of the Computational Methods in Systems Biology, International Conference, 2007

2006
Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006


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