Robert F. Murphy
Orcid: 0000-0003-0358-901X
According to our database1,
Robert F. Murphy
authored at least 80 papers
between 2000 and 2024.
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Bibliography
2024
Bioinform., February, 2024
2023
J. Integr. Bioinform., March, 2023
Implementing and Evaluating ASSISTments Online Math Homework Support At large Scale over Two Years: Findings and Lessons Learned.
Proceedings of the Artificial Intelligence in Education - 24th International Conference, 2023
2022
Bioinform., November, 2022
2021
Evaluation of categorical matrix completion algorithms: toward improved active learning for drug discovery.
Bioinform., 2021
2020
Learning complex subcellular distribution patterns of proteins via analysis of immunohistochemistry images.
Bioinform., 2020
2019
Learning the sequence of influenza A genome assembly during viral replication using point process models and fluorescence in situ hybridization.
PLoS Comput. Biol., 2019
Nat., 2019
Bioinform., 2019
Integration of Heterogeneous Experimental Data Improves Global Map of Human Protein Complexes.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019
2018
Proceedings of the 2018 IEEE Winter Conference on Applications of Computer Vision, 2018
2017
Bioinform., 2017
2016
Unbiased Rare Event Sampling in Spatial Stochastic Systems Biology Models Using a Weighted Ensemble of Trajectories.
PLoS Comput. Biol., 2016
2015
Automated Learning of Subcellular Variation among Punctate Protein Patterns and a Generative Model of Their Relation to Microtubules.
PLoS Comput. Biol., 2015
Deciding when to stop: Efficient stopping of active learning guided drug-target prediction.
CoRR, 2015
Deciding when to stop: efficient experimentation to learn to predict drug-target interactions.
BMC Bioinform., 2015
Deciding When to Stop: Efficient Experimentation to Learn to Predict Drug-Target Interactions (Extended Abstract).
Proceedings of the Research in Computational Molecular Biology, 2015
Design Automation for Biological Models: A Pipeline that Incorporates Spatial and Molecular Complexity.
Proceedings of the 25th edition on Great Lakes Symposium on VLSI, GLVLSI 2015, Pittsburgh, PA, USA, May 20, 2015
2014
BMC Bioinform., 2014
Implementation of an Intelligent Tutoring System for Online Homework Support in an Efficacy Trial.
Proceedings of the Intelligent Tutoring Systems - 12th International Conference, 2014
Using Analytics for Improving Implementation Fidelity in an Large Scale Efficacy Trial.
Proceedings of the Learning and Becoming in Practice: Proceedings of the 11th International Conference of the Learning Sciences, 2014
2013
Determining the subcellular location of new proteins from microscope images using local features.
Bioinform., 2013
2012
Protein subcellular location pattern classification in cellular images using latent discriminative models.
Bioinform., 2012
(3) The CellOrganizer project: An open source system to learn image-derived models of subcellular organization over time and space.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012
2011
IEEE ACM Trans. Comput. Biol. Bioinform., 2011
J. Comput. Biol., 2011
Model building and intelligent acquisition with application to protein subcellular location classification.
Bioinform., 2011
Automated estimation of microtubule model parameters from 3-D live cell microscopy images.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011
Determination of protein location diversity via analysis of immunohistochemical images from the Human Protein Atlas.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011
2010
Structured literature image finder: Parsing text and figures in biomedical literature.
J. Web Semant., 2010
Bioinform., 2010
Quantifying the distribution of probes between subcellular locations using unsupervised pattern unmixing.
Bioinform., 2010
A graphical model to determine the subcellular protein location in artificial tissues.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010
2009
IEEE Trans. Image Process., 2009
Structured correspondence topic models for mining captioned figures in biological literature.
Proceedings of the 15th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, Paris, France, June 28, 2009
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009
Nuclear Segmentation in Microscope Cell Images: A Hand-Segmented Dataset and Comparison of Algorithms.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009
Proceedings of the 26th Annual International Conference on Machine Learning, 2009
2008
Graphical Models for Structured Classification, with an Application to Interpreting Images of Protein Subcellular Location Patterns.
J. Mach. Learn. Res., 2008
Improved recognition of figures containing fluorescence microscope images in online journal articles using graphical models.
Bioinform., 2008
Proceedings of the Linking Literature, Information, and Knowledge for Biology, 2008
Structured Literature Image Finder: Extracting Information from Text and Images in Biomedical Literature.
Proceedings of the Linking Literature, Information, and Knowledge for Biology, 2008
Deformation-based nonlinear dimension reduction: Applications to nuclear morphometry.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008
Automated proteome-wide determination of subcellular location using high throughput microscopy.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008
Automated comparison of protein subcellular location patterns between images of normal and cancerous tissues.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008
Proceedings of the Bioinformatics Research and Development, 2008
2007
A multiresolution approach to automated classification of protein subcellular location images.
BMC Bioinform., 2007
Proceedings of the Biocomputing 2007, 2007
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007
Systematic Description of Subcellular Location for Integration with Proteomics Databases and Systems Biology Modeling.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007
Identifying Fluorescence Microscope Images in Online Journal Articles Using Both Image and Text Features.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007
Proceedings of the International Conference on Image Processing, 2007
Interpretation of Protein Subcellular Location Patterns in 3D Images Across Cell Types and Resolutions.
Proceedings of the Bioinformatics Research and Development, First International Conference, 2007
2006
A graphical model approach to automated classification of protein subcellular location patterns in multi-cell images.
BMC Bioinform., 2006
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006
Application of temporal texture features to automated analysis of protein subcellular locations in time series fluorescence microscope images.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006
A novel approximate inference approach to automated classification of protein subcellular location patterns in multi-cell images.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006
2005
IEEE Trans. Image Process., 2005
Proceedings of the ACM SIGMOD International Conference on Management of Data, 2005
Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005
Proceedings of the 2005 IEEE International Conference on Acoustics, 2005
Data Mining Methods for a Systematics of Protein Subcellular Location.
Proceedings of the Data Mining in Bioinformatics, 2005
2004
Boosting accuracy of automated classification of fluorescence microscope images for location proteomics.
BMC Bioinform., 2004
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004
Automated Classification of Subcellular Patterns In Multicell Images Without Segmentation Into Single Cells.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004
2003
Robust Numerical Features for Description and Classification of Subcellular Location Patterns in Fluorescence Microscope Images.
J. VLSI Signal Process., 2003
Proceedings of the 3nd ACM SIGKDD Workshop on Data Mining in Bioinformatics (BIOKDD 2003), 2003
Proceedings of the Ninth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, Washington, DC, USA, August 24, 2003
2002
Robust classification of subcellular location patterns in fluorescence microscope images.
Proceedings of the 12th IEEE Workshop on Neural Networks for Signal Processing, 2002
Automated determination of protein subcellular locations from 3D fluorescence microscope images.
Proceedings of the 2002 IEEE International Symposium on Biomedical Imaging, 2002
Image content-based retrieval and automated interpretation of fluorescence microscope images via the protein subcellular location image database.
Proceedings of the 2002 IEEE International Symposium on Biomedical Imaging, 2002
2001
A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells.
Bioinform., 2001
Searching Online Journals for Fluorescence Microscope Images Depicting Protein Subcellular Location Patterns.
Proceedings of the 2nd IEEE International Symposium on Bioinformatics and Bioengineering, 2001
2000
Towards a Systematics for Protein Subcellular Location: Quantitative Description of Protein Localization Patterns and Automated Analysis of Fluorescence Microscope Images.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000