Filippo Utro

According to our database1, Filippo Utro authored at least 36 papers between 2007 and 2019.

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Bibliography

2019
Computation Cluster Validation in the Big Data Era.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

DNA combinatorial messages and Epigenomics: The case of chromatin organization and nucleosome occupancy in eukaryotic genomes.
Theor. Comput. Sci., 2019

Linear Time Algorithms to Construct Populations Fitting Multiple Constraint Distributions at Genomic Scales.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Dark-matter matters: Discriminating subtle blood cancers using the darkest DNA.
PLoS Comput. Biol., 2019

2018
In vitro versus in vivo compositional landscapes of histone sequence preferences in eucaryotic genomes.
Bioinform., 2018

Essential Simplices in Persistent Homology and Subtle Admixture Detection.
Proceedings of the 18th International Workshop on Algorithms in Bioinformatics, 2018

Simultaneous Phasing of Multiple Polyploids.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2018

2017
Foreword: Algorithms, Strings and Theoretical Approaches in the Big Data Era - Special Issue in Honor of the 60th Birthday of Professor Raffaele Giancarlo.
Theor. Comput. Sci., 2017

A Quantitative and Qualitative Characterization of k-mer Based Alignment-Free Phylogeny Construction.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2017

2016
The intrinsic combinatorial organization and information theoretic content of a sequence are correlated to the DNA encoded nucleosome organization of eukaryotic genomes.
Bioinform., 2016

Sampling ARG of multiple populations under complex configurations of subdivision and admixture.
Bioinform., 2016

2015
Bayesian versus data driven model selection for microarray data.
Nat. Comput., 2015

ValWorkBench: An open source Java library for cluster validation, with applications to microarray data analysis.
Comput. Methods Programs Biomed., 2015

Epigenomic <i>k</i>-mer dictionaries: shedding light on how sequence composition influences <i>in vivo</i> nucleosome positioning.
Bioinform., 2015

Topological Signatures for Population Admixture.
Proceedings of the Research in Computational Molecular Biology, 2015

2014
Effect of sampling on the extent and accuracy of the inferred genetic history of recombining genome.
Comput. Biol. Chem., 2014

Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies.
Briefings Bioinform., 2014

2013
Sum of parts is greater than the whole: inference of common genetic history of populations.
BMC Genom., 2013

A methodology to assess the intrinsic discriminative ability of a distance function and its interplay with clustering algorithms for microarray data analysis.
BMC Bioinform., 2013

Efficient <i>in silico</i> Chromosomal Representation of Populations via Indexing Ancestral Genomes.
Algorithms, 2013

Genetic History of Populations: Limits to Inference.
Proceedings of the Models and Algorithms for Genome Evolution, 2013

2012
Algorithmic paradigms for stability-based cluster validity and model selection statistical methods, with applications to microarray data analysis.
Theor. Comput. Sci., 2012

Textual data compression in computational biology: Algorithmic techniques.
Comput. Sci. Rev., 2012

The Chromatin Organization of an Eukaryotic Genome : Sequence Specific+ Statistical=Combinatorial (Extended Abstract)
CoRR, 2012

ARG-based genome-wide analysis of cacao cultivars.
BMC Bioinform., 2012

<i>GenomicTools</i>: a computational platform for developing high-throughput analytics in genomics.
Bioinform., 2012

Stability-Based Model Selection for High Throughput Genomic Data: An Algorithmic Paradigm.
Proceedings of the Artificial Immune Systems - 11th International Conference, 2012

2011
Algorithms for Internal Validation Clustering Measures in the Post Genomic Era
CoRR, 2011

IRiS: Construction of ARG networks at genomic scales.
Bioinform., 2011

Speeding up the Consensus Clustering methodology for microarray data analysis.
Algorithms Mol. Biol., 2011

2010
Functional Information, Biomolecular Messages and Complexity of BioSequences and Structures.
Proceedings of the Structure Discovery in Biology: Motifs, Networks & Phylogenies, 06.06., 2010

The Three Steps of Clustering in the Post-Genomic Era: A Synopsis.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2010

2009
Textual data compression in computational biology: a synopsis.
Bioinform., 2009

2008
A Tutorial on Computational Cluster Analysis with Applications to Pattern Discovery in Microarray Data.
Math. Comput. Sci., 2008

Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer.
BMC Bioinform., 2008

2007
A basic analysis toolkit for biological sequences.
Algorithms Mol. Biol., 2007


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