Luca Pinello

According to our database, Luca Pinello authored at least 22 papers between 2007 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

A survey on algorithms to characterize transcription factor binding sites.

Manuel Tognon, Rosalba Giugno, Luca Pinello

Briefings Bioinform., May, 2023

2021

GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs.

Manuel Tognon, Vincenzo Bonnici, Erik Garrison, Rosalba Giugno, Luca Pinello

PLoS Comput. Biol., 2021

2020

Robust and Scalable Learning of Complex Intrinsic Dataset Geometry via ElPiGraph.

Luca Albergante, Evgeny M. Mirkes, Jonathan Bac, Huidong Chen, Alexis Martin, Louis Faure, Emmanuel Barillot, Luca Pinello, Alexander N. Gorban, Andrei Yu. Zinovyev

Entropy, 2020

CRISPRitz: rapid, high-throughput and variant-aware in silico off-target site identification for CRISPR genome editing.

Samuele Cancellieri, Matthew C. Canver, Nicola Bombieri, Rosalba Giugno, Luca Pinello

Bioinform., 2020

2019

12 Grand Challenges in Single-Cell Data Science.

David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth

PeerJ Prepr., 2019

DrugThatGene: integrative analysis to streamline the identification of druggable genes, pathways and protein complexes from CRISPR screens.

Matthew C. Canver, Daniel E. Bauer, Takahiro Maeda, Luca Pinello

Bioinform., 2019

2018

Robust and scalable learning of data manifolds with complex topologies via ElPiGraph.

Luca Albergante, Evgeny M. Mirkes, Huidong Chen, Alexis Martin, Louis Faure, Emmanuel Barillot, Luca Pinello, Alexander N. Gorban, Andrei Yu. Zinovyev

CoRR, 2018

Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements.

Luca Pinello, Rick Farouni, Guo-Cheng Yuan

Bioinform., 2018

AmpUMI: design and analysis of unique molecular identifiers for deep amplicon sequencing.

Kendell Clement, Rick Farouni, Daniel E. Bauer, Luca Pinello

Bioinform., 2018

2014

Applications of alignment-free methods in epigenomics.

Luca Pinello, Giosuè Lo Bosco, Guo-Cheng Yuan

Briefings Bioinform., 2014

A New Feature Selection Methodology for K-mers Representation of DNA Sequences.

Giosuè Lo Bosco, Luca Pinello

Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2014

2013

A methodology to assess the intrinsic discriminative ability of a distance function and its interplay with clustering algorithms for microarray data analysis.

Raffaele Giancarlo, Giosuè Lo Bosco, Luca Pinello, Filippo Utro

BMC Bioinform., 2013

2011

Multi Layer Analysis

Luca Pinello

CoRR, 2011

A motif-independent metric for DNA sequence specificity.

Luca Pinello, Giosuè Lo Bosco, Bret M. Hanlon, Guo-Cheng Yuan

BMC Bioinform., 2011

A New Dissimilarity Measure for Clustering Seismic Signals.

Francesco Benvegna, Antonino D'Alessandro, Giosuè Lo Bosco, Dario Luzio, Luca Pinello, Domenico Tegolo

Proceedings of the Image Analysis and Processing - ICIAP 2011, 2011

2010

Distance Functions, Clustering Algorithms and Microarray Data Analysis.

Raffaele Giancarlo, Giosuè Lo Bosco, Luca Pinello

Proceedings of the Learning and Intelligent Optimization, 4th International Conference, 2010

The Three Steps of Clustering in the Post-Genomic Era: A Synopsis.

Raffaele Giancarlo, Giosuè Lo Bosco, Luca Pinello, Filippo Utro

Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2010

2009

A one class KNN for signal identification: a biological case study.

Vito Di Gesù, Giosuè Lo Bosco, Luca Pinello

Int. J. Knowl. Eng. Soft Data Paradigms, 2009

A Fuzzy One Class Classifier for Multi Layer Model.

Giosuè Lo Bosco, Luca Pinello

Proceedings of the Fuzzy Logic and Applications, 8th International Workshop, 2009

2008

A One Class Classifier for Signal Identification: A Biological Case Study.

Vito Di Gesù, Giosuè Lo Bosco, Luca Pinello

Proceedings of the Knowledge-Based Intelligent Information and Engineering Systems, 2008

Interval Length Analysis in Multi Layer Model.

Vito Di Gesù, Giosuè Lo Bosco, Luca Pinello

Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2008

2007

A New Multi-Layers Method to Analyze Gene Expression.

Davide F. V. Corona, Vito Di Gesù, Giosuè Lo Bosco, Luca Pinello, Guo-Cheng Yuan

Proceedings of the Knowledge-Based Intelligent Information and Engineering Systems, 2007