Francisco Azuaje

According to our database1, Francisco Azuaje authored at least 82 papers between 1999 and 2020.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2020
A Network-Based Embedding Method for Drug-Target Interaction Prediction.
Proceedings of the 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2020

2017
Computational models for predicting drug responses in cancer research.
Briefings Bioinform., 2017

2014
An information theoretic approach to assessing gene-ontology-driven similarity and its application.
Int. J. Data Min. Bioinform., 2014

2013
Correlating adverse drug reactions with biological pathways in humans.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Detection of protein complexes in protein interaction networks is improved through network-driven functional homogeneity analysis.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012
Bioinformatics as a driver, not a passenger, of translational biomedical research: Perspectives from the 6<sup>th </sup>Benelux bioinformatics conference.
J. Clin. Bioinform., 2012

Gene set analysis in the cloud.
Bioinform., 2012

Drug-target network in myocardial infarction: A structural analysis.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

2011
Systems-based biological concordance and predictive reproducibility of gene set discovery methods in cardiovascular disease.
J. Biomed. Informatics, 2011

Predictive integration of gene functional similarity and co-expression defines treatment response of endothelial progenitor cells.
BMC Syst. Biol., 2011

Prognostic transcriptional association networks: a new supervised approach based on regression trees.
Bioinform., 2011

Computational discrete models of tissue growth and regeneration.
Briefings Bioinform., 2011

2010
Integration of Gene Ontology-based similarities for supporting analysis of protein-protein interaction networks.
Pattern Recognit. Lett., 2010

eNelator: A simulation system for large-scale vulnerability analysis of species-, disease- and process-specific protein networks.
J. Comput. Sci., 2010

Transcriptional networks characterize ventricular dysfunction after myocardial infarction: A proof-of-concept investigation.
J. Biomed. Informatics, 2010

Multi-level integrative analysis of Protein - Protein Interaction networks: connecting completeness, depth and robustness.
Int. J. Comput. Biol. Drug Des., 2010

A knowledge-driven probabilistic framework for the prediction of protein-protein interaction networks.
Comput. Biol. Medicine, 2010

Coordinated modular functionality and prognostic potential of a heart failure biomarker-driven interaction network.
BMC Syst. Biol., 2010

Identification of potential targets in biological signalling systems through network perturbation analysis.
Biosyst., 2010

Ontology- and graph-based similarity assessment in biological networks.
Bioinform., 2010

From Experimental Approaches to Computational Techniques: A Review on the Prediction of Protein-Protein Interactions.
Adv. Artif. Intell., 2010

seGOsa: Software environment for gene ontology-driven similarity assessment.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

2009
Machine Learning Techniques for the Automated Classification of Adhesin-Like Proteins in the Human Protozoan Parasite Trypanosoma cruzi.
IEEE ACM Trans. Comput. Biol. Bioinform., 2009

GRIP: A web-based system for constructing Gold Standard datasets for protein-protein interaction prediction.
Source Code Biol. Medicine, 2009

Computational biology for cardiovascular biomarker discovery.
Briefings Bioinform., 2009

Assessing the Most Effective Depth for PPI Analysis.
Proceedings of the International Joint Conferences on Bioinformatics, 2009

Assessing the impact of network depth on the analysis of PPI networks: A case study.
Proceedings of the 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2009

A standard-compliant global map of the bile acid/xenobiotic signaling network: Construction and automated query processing.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009

2008
Special Section on Machine Intelligence Approaches to Systems Biology.
IEEE Trans. Syst. Man Cybern. Part B, 2008

Improving Pattern Discovery and Visualization of SAGE Data Through Poisson-Based Self-Adaptive Neural Networks.
IEEE Trans. Inf. Technol. Biomed., 2008

Permutation - based statistical tests for multiple hypotheses.
Source Code Biol. Medicine, 2008

Computational prediction of protein interaction networks through supervised classification techniques.
Int. J. Funct. Informatics Pers. Medicine, 2008

Clustering-based approaches to SAGE data mining.
BioData Min., 2008

Reassessing the limit of data integration for the prediction of protein-protein interactions in Saccharomyces cerevisiae.
Proceedings of the 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2008

2007
Poisson-Based Self-Organizing Feature Maps and Hierarchical Clustering for Serial Analysis of Gene Expression Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2007

Inferring Adaptive Regulation Thresholds and Association Rules from Gene Expression Data through Combinatorial Optimization Learning.
IEEE ACM Trans. Comput. Biol. Bioinform., 2007

Integration and analysis of heterogeneous microarray data sources for supporting drug target identification in atherosclerosis.
BMC Syst. Biol., 2007

Self-Adaptive Neural Networks Based on a Poisson Approach for Knowledge Discovery.
Proceedings of the IJCAI 2007, 2007

Supervised Statistical and Machine Learning Approaches to Inferring Pairwise and Module-Based Protein Interaction Networks.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006
An assessment of recently published gene expression data analyses: reporting experimental design and statistical factors.
BMC Medical Informatics Decis. Mak., 2006

An assessment of machine and statistical learning approaches to inferring networks of protein-protein interactions.
J. Integr. Bioinform., 2006

Machine learning approaches to supporting the identification of photoreceptor-enriched genes based on expression data.
BMC Bioinform., 2006

Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions.
Proceedings of the Workshops Proceedings of the 6th IEEE International Conference on Data Mining (ICDM 2006), 2006

Incorporating Biological Domain Knowledge into Cluster Validity Assessment.
Proceedings of the Applications of Evolutionary Computing, 2006

Computational Approaches to Supporting Large-Scale Analysis of Photoreceptor-Enriched Gene Expression.
Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006

Semi-Supervised Clustering Models for Clinical Risk Assessment.
Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006

A Supervised Learning Approach to Predicting Coronary Heart Disease Complications in Type 2 Diabetes Mellitus Patients.
Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006

2005
Non-linear mapping for exploratory data analysis in functional genomics.
BMC Bioinform., 2005

A knowledge-driven approach to cluster validity assessment.
Bioinform., 2005

An integrated tool for microarray data clustering and cluster validity assessment .
Bioinform., 2005

Integrative data analysis for functional prediction: a multi-objective optimization approach.
Bioinform., 2005

An Ontology-Driven Clustering Method for Supporting Gene Expression Analysis.
Proceedings of the 18th IEEE Symposium on Computer-Based Medical Systems (CBMS 2005), 2005

A Missing Data Estimation Analysis in Type II Diabetes Databases.
Proceedings of the 18th IEEE Symposium on Computer-Based Medical Systems (CBMS 2005), 2005

Data and Predictive Model Integration: An Overview of Key Concepts, Problems and Solutions.
Proceedings of the Data Analysis and Visualization in Genomics and Proteomics, 2005

Integrative Data Analysis and Visualization: Introduction to Critical Problems, Goals and Challenges.
Proceedings of the Data Analysis and Visualization in Genomics and Proteomics, 2005

2004
Reply to comments on 'A computational evolutionary approach to evolving game strategy and Cooperation'.
IEEE Trans. Syst. Man Cybern. Part B, 2004

An integrative and interactive framework for improving biomedical pattern discovery and visualization.
IEEE Trans. Inf. Technol. Biomed., 2004

Knowledge Discovery in Lymphoma Cancer from Gene-Expression.
Proceedings of the Intelligent Data Engineering and Automated Learning, 2004

A Non-Random Data Sampling Method for Classification Model Assessment.
Proceedings of the 17th International Conference on Pattern Recognition, 2004

Data Mining Approaches to Diffuse Large B-Cell Lymphoma Gene Expression Data Interpretation.
Proceedings of the Data Warehousing and Knowledge Discovery, 6th International Conference, 2004

Interactive GSOM-Based Approaches for Improving Biomedical Pattern Discovery and Visualization.
Proceedings of the Computational and Information Science, First International Symposium, 2004

Gene expression correlation and gene ontology-based similarity: an assessment of quantitative relationships.
Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2004

Incorporating Ontology-Driven Similarity Knowledge into Functional Genomics: An Exploratory Study.
Proceedings of the 4th IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2004), 2004

2003
A computational evolutionary approach to evolving game strategy and cooperation.
IEEE Trans. Syst. Man Cybern. Part B, 2003

Cluster validation techniques for genome expression data.
Signal Process., 2003

A markup language for electrocardiogram data acquisition and analysis (ecgML).
BMC Medical Informatics Decis. Mak., 2003

Genomic data sampling and its effect on classification performance assessment.
BMC Bioinform., 2003

Machaon CVE: cluster validation for gene expression data.
Bioinform., 2003

Clustering-based Approaches to Discovering and Visualising Microarray Data Patterns.
Briefings Bioinform., 2003

Editorial - AI in the Life Sciences.
Artif. Intell. Rev., 2003

An Immune-inspired Approach to Learning and Classification.
Proceedings of the 21st IASTED International Multi-Conference on Applied Informatics (AI 2003), 2003

2002
A cluster validity framework for genome expression data.
Bioinform., 2002

2001
A computational neural approach to support the discovery of gene function and classes of cancer.
IEEE Trans. Biomed. Eng., 2001

Adaptation and reverse evolution in a digital ecosystem.
Proceedings of the IEEE International Conference on Systems, 2001

A Genetic Algorithm and Growing Cell Structure Approach to Learning Case Retrieval Structures.
Proceedings of the Soft Computing in Case Based Reasoning, 2001

2000
An unsupervised neural learning approach to retrieval strategies for case-based reasoning and decision support.
PhD thesis, 2000

Discovering relevance knowledge in data: a growing cell structures approach.
IEEE Trans. Syst. Man Cybern. Part B, 2000

Retrieval strategies for case-based reasoning: a categorised bibliography.
Knowl. Eng. Rev., 2000

Making genome expression data meaningful: Prediction and discovery of classes of cancer through a connectionist learning approach.
Proceedings of the 1st IEEE International Symposium on Bioinformatics and Biomedical Engineering, 2000

1999
Improving clinical decision support through case-based data fusion.
IEEE Trans. Biomed. Eng., 1999

Predicting coronary disease risk based on short-term RR interval measurements: a neural network approach.
Artif. Intell. Medicine, 1999

On local and global feature weight discovery for case-based reasoning.
Proceedings of the Computers and Their Applications (CATA-99), 1999


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