Gajendra P. S. Raghava

Orcid: 0000-0002-8902-2876

According to our database1, Gajendra P. S. Raghava authored at least 99 papers between 2001 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Online presence:

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Bibliography

2024
A method for predicting linear and conformational B-cell epitopes in an antigen from its primary sequence.
Comput. Biol. Medicine, March, 2024

2023
A Highly Accurate Model for Screening Prostate Cancer Using Propensity Index Panel of Ten Genes.
J. Comput. Biol., December, 2023

Risk assessment of cancer patients based on HLA-I alleles, neobinders and expression of cytokines.
Comput. Biol. Medicine, December, 2023

TNFepitope: A webserver for the prediction of TNF-α inducing epitopes.
Comput. Biol. Medicine, June, 2023

A web server for predicting and scanning of IL-5 inducing peptides using alignment-free and alignment-based method.
Comput. Biol. Medicine, May, 2023

Pfeature: A Tool for Computing Wide Range of Protein Features and Building Prediction Models.
J. Comput. Biol., February, 2023

SalivaDB - a comprehensive database for salivary biomarkers in humans.
Database J. Biol. Databases Curation, February, 2023

Prediction of RNA-interacting residues in a protein using CNN and evolutionary profile.
Briefings Bioinform., January, 2023

DMPPred: a tool for identification of antigenic regions responsible for inducing type 1 diabetes mellitus.
Briefings Bioinform., January, 2023

Advances in the field of phage-based therapy with special emphasis on computational resources.
Briefings Bioinform., January, 2023

2022
Computational resources in healthcare.
WIREs Data Mining Knowl. Discov., 2022

IL13Pred: A method for predicting immunoregulatory cytokine IL-13 inducing peptides.
Comput. Biol. Medicine, 2022

Collection, compilation and analysis of bacterial vaccines.
Comput. Biol. Medicine, 2022

ToxinPred2: an improved method for predicting toxicity of proteins.
Briefings Bioinform., 2022

A deep learning-based method for the prediction of DNA interacting residues in a protein.
Briefings Bioinform., 2022

HLAncPred: a method for predicting promiscuous non-classical HLA binding sites.
Briefings Bioinform., 2022

2021
AlgPred 2.0: an improved method for predicting allergenic proteins and mapping of IgE epitopes.
Briefings Bioinform., July, 2021

Crowdsourcing digital health measures to predict Parkinson's disease severity: the Parkinson's Disease Digital Biomarker DREAM Challenge.
npj Digit. Medicine, 2021

ProCanBio: A Database of Manually Curated Biomarkers for Prostate Cancer.
J. Comput. Biol., 2021

ChAlPred: A web server for prediction of allergenicity of chemical compounds.
Comput. Biol. Medicine, 2021

SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly.
Comput. Biol. Medicine, 2021

In-silico identification of subunit vaccine candidates against lung cancer-associated oncogenic viruses.
Comput. Biol. Medicine, 2021

Computer-aided prediction of inhibitors against STAT3 for managing COVID-19 associated cytokine storm.
Comput. Biol. Medicine, 2021

DenvInD: dengue virus inhibitors database for clinical and molecular research.
Briefings Bioinform., 2021

Computer-aided prediction and design of IL-6 inducing peptides: IL-6 plays a crucial role in COVID-19.
Briefings Bioinform., 2021

AntiCP 2.0: an updated model for predicting anticancer peptides.
Briefings Bioinform., 2021

2020
CancerLivER: a database of liver cancer gene expression resources and biomarkers.
Database J. Biol. Databases Curation, 2020

2019
Benchmarking of different molecular docking methods for protein-peptide docking.
BMC Bioinform., 2019

ImmunoSPdb: an archive of immunosuppressive peptides.
Database J. Biol. Databases Curation, 2019

PRRDB 2.0: a comprehensive database of pattern-recognition receptors and their ligands.
Database J. Biol. Databases Curation, 2019

RareLSD: a manually curated database of lysosomal enzymes associated with rare diseases.
Database J. Biol. Databases Curation, 2019

ccPDB 2.0: an updated version of datasets created and compiled from Protein Data Bank.
Database J. Biol. Databases Curation, 2019

2018
AntiTbPdb: a knowledgebase of anti-tubercular peptides.
Database J. Biol. Databases Curation, 2018

2017
Novel in silico tools for designing peptide-based subunit vaccines and immunotherapeutics.
Briefings Bioinform., 2017

Challenges in Prediction of different Cancer Stages using Gene Expression Profile of Cancer Patients.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016
SATPdb: a database of structurally annotated therapeutic peptides.
Nucleic Acids Res., 2016

CPPsite 2.0: a repository of experimentally validated cell-penetrating peptides.
Nucleic Acids Res., 2016

2015
CancerPPD: a database of anticancer peptides and proteins.
Nucleic Acids Res., 2015

AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides.
Nucleic Acids Res., 2015

2014
Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides.
Nucleic Acids Res., 2014

Designing of peptides with desired half-life in intestine-like environment.
BMC Bioinform., 2014

Prediction of uridine modifications in tRNA sequences.
BMC Bioinform., 2014

ParaPep: a web resource for experimentally validated antiparasitic peptide sequences and their structures.
Database J. Biol. Databases Curation, 2014

2013
NPACT: Naturally Occurring Plant-based Anti-cancer Compound-Activity-Target database.
Nucleic Acids Res., 2013

Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information.
BMC Bioinform., 2013

PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors.
BMC Bioinform., 2013

lncRNome: a comprehensive knowledgebase of human long noncoding RNAs.
Database J. Biol. Databases Curation, 2013

2012
ccPDB: compilation and creation of data sets from Protein Data Bank.
Nucleic Acids Res., 2012

ProGlycProt: a repository of experimentally characterized prokaryotic glycoproteins.
Nucleic Acids Res., 2012

CPPsite: a curated database of cell penetrating peptides.
Database J. Biol. Databases Curation, 2012

2011
CCDB: a curated database of genes involved in cervix cancer.
Nucleic Acids Res., 2011

2010
AntigenDB: an immunoinformatics database of pathogen antigens.
Nucleic Acids Res., 2010

Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information.
BMC Bioinform., 2010

AntiBP2: improved version of antibacterial peptide prediction.
BMC Bioinform., 2010

Virtual Screening of potential drug-like inhibitors against Lysine/DAP pathway of <i>Mycobacterium tuberculosis</i>.
BMC Bioinform., 2010

K<i>i</i>DoQ: using docking based energy scores to develop ligand based model for predicting antibacterials.
BMC Bioinform., 2010

Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information.
BMC Bioinform., 2010

Identification of NAD interacting residues in proteins.
BMC Bioinform., 2010

2009
Prediction of Polyadenylation Signals in Human DNA Sequences using Nucleotide Frequencies.
Silico Biol., 2009

Prediction of nuclear proteins using SVM and HMM models.
BMC Bioinform., 2009

Identification of ATP binding residues of a protein from its primary sequence.
BMC Bioinform., 2009

Prediction of guide strand of microRNAs from its sequence and secondary structure.
BMC Bioinform., 2009

2008
COPid: Composition Based Protein Identification.
Silico Biol., 2008

A Machine Learning Based Method for the Prediction of Secretory Proteins Using Amino Acid Composition, Their Order and Similarity-Search.
Silico Biol., 2008

Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using SVM and PSSM profiles.
BMC Bioinform., 2008

ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins.
BMC Bioinform., 2008

2007
BTXpred: Prediction of Bacterial Toxins.
Silico Biol., 2007

Prediction of Neurotoxins Based on Their Function and Source.
Silico Biol., 2007

Oxypred: Prediction and Classification of Oxygen-Binding Proteins.
Genom. Proteom. Bioinform., 2007

Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs.
BMC Bioinform., 2007

Analysis and prediction of antibacterial peptides.
BMC Bioinform., 2007

Identification of DNA-binding proteins using support vector machines and evolutionary profiles.
BMC Bioinform., 2007

2006
Prediction of subcellular localization of proteins using pairwise sequence alignment and support vector machine.
Pattern Recognit. Lett., 2006

AlgPred: prediction of allergenic proteins and mapping of IgE epitopes.
Nucleic Acids Res., 2006

Prediction of C<sup>α</sup>-H·O and C<sup>α</sup>-H·π Interactions in Proteins Using Recurrent Neural Network.
Silico Biol., 2006

VGIchan: Prediction and Classification of Voltage-Gated Ion Channels.
Genom. Proteom. Bioinform., 2006

VICMpred: An SVM-based Method for the Prediction of Functional Proteins of Gram-negative Bacteria Using Amino Acid Patterns and Composition.
Genom. Proteom. Bioinform., 2006

Quantification of the variation in percentage identity for protein sequence alignments.
BMC Bioinform., 2006

Machine learning techniques in disease forecasting: a case study on rice blast prediction.
BMC Bioinform., 2006

HaptenDB: a comprehensive database of haptens, carrier proteins and anti-hapten antibodies.
Bioinform., 2006

2005
BhairPred: prediction of ß-hairpins in a protein from multiple alignment information using ANN and SVM techniques.
Nucleic Acids Res., 2005

Pcleavage: an SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences.
Nucleic Acids Res., 2005

GPCRsclass: a web tool for the classification of amine type of G-protein-coupled receptors.
Nucleic Acids Res., 2005

Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein.
BMC Bioinform., 2005

PSLpred: prediction of subcellular localization of bacterial proteins.
Bioinform., 2005

2004
ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST.
Nucleic Acids Res., 2004

GPCRpred: an SVM-based method for prediction of families and subfamilies of G-protein coupled receptors.
Nucleic Acids Res., 2004

Spectral Repeat Finder (SRF): identification of repetitive sequences using Fourier transformation.
Bioinform., 2004

A neural network method for prediction of ?-turn types in proteins using evolutionary information.
Bioinform., 2004

SVM based method for predicting HLA-DRB1<sup>*</sup>0401 binding peptides in an antigen sequence.
Bioinform., 2004

BcePred: Prediction of Continuous B-Cell Epitopes in Antigenic Sequences Using Physico-chemical Properties.
Proceedings of the Artificial Immune Systems, Third International Conference, 2004

2003
Bteval: a Server for Evaluation of beta-turn Prediction Methods.
J. Bioinform. Comput. Biol., 2003

OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy.
BMC Bioinform., 2003

ProPred1: Prediction of Promiscuous MHC Class-I Binding Sites.
Bioinform., 2003

MHCBN: a comprehensive database of MHC binding and non-binding peptides.
Bioinform., 2003

2002
An evaluation of ß-turn prediction methods.
Bioinform., 2002

BetaTPred: prediction of beta-TURNS in a protein using statistical algorithms.
Bioinform., 2002

Locating probable genes using Fourier transform approach.
Bioinform., 2002

2001
ProPred: prediction of HLA-DR binding sites.
Bioinform., 2001


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