M. Michael Gromiha

According to our database1, M. Michael Gromiha authored at least 89 papers between 1999 and 2020.

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Bibliography

2020
Guest Editorial for Special Section on the 14th International Conference on Intelligent Computing (ICIC).
IEEE ACM Trans. Comput. Biol. Bioinform., 2020

VEPAD - Predicting the effect of variants associated with Alzheimer's disease using machine learning.
Comput. Biol. Medicine, 2020

Insights into changes in binding affinity caused by disease mutations in protein-protein complexes.
Comput. Biol. Medicine, 2020

Multi-omics-based identification of SARS-CoV-2 infection biology and candidate drugs against COVID-19.
Comput. Biol. Medicine, 2020

ProCaff: protein-carbohydrate complex binding affinity database.
Bioinform., 2020

AggreRATE-Pred: a mathematical model for the prediction of change in aggregation rate upon point mutation.
Bioinform., 2020

ProAffiMuSeq: sequence-based method to predict the binding free energy change of protein-protein complexes upon mutation using functional classification.
Bioinform., 2020

2019
Protein Structural Bioinformatics: An Overview.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

Guest Editorial for Special Section on the 13th International Conference on Intelligent Computing (ICIC).
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Seq2Feature: a comprehensive web-based feature extraction tool.
Bioinform., 2019

2018
Identification and Analysis of Key Residues in Protein-RNA Complexes.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Guest Editorial for Special Section on the 12th International Conference on Intelligent Computing (ICIC).
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

MutHTP: mutations in human transmembrane proteins.
Bioinform., 2018

Discrimination and Prediction of Protein-Protein Binding Affinity Using Deep Learning Approach.
Proceedings of the Intelligent Computing Theories and Application, 2018

2017
Guest Editorial for Special Section on the 11th International Conference on Intelligent Computing (ICIC).
IEEE ACM Trans. Comput. Biol. Bioinform., 2017

PROXiMATE: a database of mutant protein-protein complex thermodynamics and kinetics.
Bioinform., 2017

Influence of Amino Acid Properties for Characterizing Amyloid Peptides in Human Proteome.
Proceedings of the Intelligent Computing Theories and Application, 2017

2016
Guest Editorial for Special Section on the 10th International Conference on Intelligent Computing (ICIC).
IEEE ACM Trans. Comput. Biol. Bioinform., 2016

<i>In silico</i> identification of essential proteins in <i>Corynebacterium pseudotuberculosis</i> based on protein-protein interaction networks.
BMC Syst. Biol., 2016

Computational Analysis of Similar Protein-DNA Complexes from Different Organisms to Understand Organism Specific Recognition.
Proceedings of the Intelligent Computing Theories and Application, 2016

2015
Response to the comment on 'protein-protein binding affinity prediction from amino acid sequence'.
Bioinform., 2015

Folding RaCe: a robust method for predicting changes in protein folding rates upon point mutations.
Bioinform., 2015

Development of a Machine Learning Method to Predict Membrane Protein-Ligand Binding Residues Using Basic Sequence Information.
Adv. Bioinformatics, 2015

2014
High throughput computing to improve efficiency of predicting protein stability change upon mutation.
Int. J. Data Min. Bioinform., 2014

Protein-protein binding affinity prediction from amino acid sequence.
Bioinform., 2014

GAP: towards almost 100 percent prediction for β-strand-mediated aggregating peptides with distinct morphologies.
Bioinform., 2014

Bioinformatics approaches for functional annotation of membrane proteins.
Briefings Bioinform., 2014

Identification of Novel c-Yes Kinase Inhibitors.
Proceedings of the Intelligent Computing in Bioinformatics - 10th International Conference, 2014

2013
Distinct position-specific sequence features of hexa-peptides that form amyloid-fibrils: application to discriminate between amyloid fibril and amorphous β-aggregate forming peptide sequences.
BMC Bioinform., 2013

Role of Protein Aggregation and Interactions between α-Synuclein and Calbindin in Parkinson's Disease.
Proceedings of the Intelligent Computing Theories and Technology, 2013

2012
ccPDB: compilation and creation of data sets from Protein Data Bank.
Nucleic Acids Res., 2012

Real value prediction of protein folding rate change upon point mutation.
J. Comput. Aided Mol. Des., 2012

Relationship between amino acid properties and functional parameters in olfactory receptors and discrimination of mutants with enhanced specificity.
BMC Bioinform., 2012

Introduction: advanced intelligent computing theories and their applications in bioinformatics.
BMC Bioinform., 2012

Sequence Analysis and Discrimination of Amyloid and Non-amyloid Peptides.
Proceedings of the Emerging Intelligent Computing Technology and Applications, 2012

2011
Scoring Function Based Approach for Locating Binding Sites and Understanding Recognition Mechanism of Protein-DNA Complexes.
J. Chem. Inf. Model., 2011

Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties.
Bioinform., 2011

Structure-Function Relationship in Olfactory Receptors.
Proceedings of the Bio-Inspired Computing and Applications, 2011

2010
Human-Readable Rule Generator for Integrating Amino Acid Sequence Information and Stability of Mutant Proteins.
IEEE ACM Trans. Comput. Biol. Bioinform., 2010

Prediction of membrane spanning segments and topology in beta-barrel membrane proteins at better accuracy.
J. Comput. Chem., 2010

Development of knowledge-based system for predicting the stability of proteins upon point mutations.
Neurocomputing, 2010

First insight into the prediction of protein folding rate change upon point mutation.
Bioinform., 2010

Identification and Analysis of Binding Site Residues in Protein Complexes: Energy Based Approach.
Proceedings of the Advanced Intelligent Computing Theories and Applications, 2010

Topology Prediction of <i>alpha</i>-Helical and <i>beta</i>-Barrel Transmembrane Proteins Using RBF Networks.
Proceedings of the Advanced Intelligent Computing Theories and Applications, 2010

Sequence and structural features of binding site residues in protein-protein complexes.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

2009
TMFunction: database for functional residues in membrane proteins.
Nucleic Acids Res., 2009

Multiple Contact Network Is a Key Determinant to Protein Folding Rates.
J. Chem. Inf. Model., 2009

Reliable prediction of protein thermostability change upon double mutation from amino acid sequence.
Bioinform., 2009

2008
Analysis and prediction of protein folding rates using quadratic response surface models.
J. Comput. Chem., 2008

TMBETADISC-RBF: Discrimination of beta-barrel membrane proteins using RBF networks and PSSM profiles.
Comput. Biol. Chem., 2008

Functional discrimination of membrane proteins using machine learning techniques.
BMC Bioinform., 2008

Sequence Based Prediction of Protein Mutant Stability and Discrimination of Thermophilic Proteins.
Proceedings of the Pattern Recognition in Bioinformatics, 2008

Gene Ontology term prediction based upon amino acid occurrence.
Proceedings of the International Joint Conference on Neural Networks, 2008

Neural network based prediction of protein structure and Function: Comparison with other machine learning methods.
Proceedings of the International Joint Conference on Neural Networks, 2008

2007
TMBETA-GENOME: database for annotated ß-barrel membrane proteins in genomic sequences.
Nucleic Acids Res., 2007

TMB Finding Pipeline: Novel Approach for Detecting β-Barrel Membrane Proteins in Genomic Sequences.
J. Chem. Inf. Model., 2007

Application of amino acid occurrence for discriminating different folding types of globular proteins.
BMC Bioinform., 2007

Identification of DNA-binding proteins using support vector machines and evolutionary profiles.
BMC Bioinform., 2007

iPTREE-STAB: interpretable decision tree based method for predicting protein stability changes upon mutations.
Bioinform., 2007

Protein Fold Recognition Based Upon the Amino Acid Occurrence.
Proceedings of the Pattern Recognition in Bioinformatics, 2007

Bioinformatics on beta-Barrel Membrane Proteins: Sequence and Structural Analysis, Discrimination and Prediction.
Proceedings of the Pattern Recognition in Bioinformatics, 2007

2006
CUPSAT: prediction of protein stability upon point mutations.
Nucleic Acids Res., 2006

PINT: Protein-protein Interactions Thermodynamic Database.
Nucleic Acids Res., 2006

ProTherm and ProNIT: thermodynamic databases for proteins and protein-nucleic acid interactions.
Nucleic Acids Res., 2006

FOLD-RATE: prediction of protein folding rates from amino acid sequence.
Nucleic Acids Res., 2006

A Statistical Method for Predicting Protein Unfolding Rates from Amino Acid Sequence.
J. Chem. Inf. Model., 2006

Knowledge acquisition and development of accurate rules for predicting protein stability changes.
Comput. Biol. Chem., 2006

2005
SRide: a server for identifying stabilizing residues in proteins.
Nucleic Acids Res., 2005

TMBETA-NET: discrimination and prediction of membrane spanning ß-strands in outer membrane proteins.
Nucleic Acids Res., 2005

A Statistical Model for Predicting Protein Folding Rates from Amino Acid Sequence with Structural Class Information.
J. Chem. Inf. Model., 2005

Integration of Bioinformatics and Computational Biology to Understand Protein-dna Recognition Mechanism.
J. Bioinform. Comput. Biol., 2005

Relative importance of secondary structure and solvent accessibility to the stability of protein mutants.: A case study with amino acid properties and energetics on T4 and human lysozymes.
Comput. Biol. Chem., 2005

Application of residue distribution along the sequence for discriminating outer membrane proteins.
Comput. Biol. Chem., 2005

Discrimination of outer membrane proteins using support vector machines.
Bioinform., 2005

A simple statistical method for discriminating outer membrane proteins with better accuracy.
Bioinform., 2005

2004
ProTherm, version 4.0: thermodynamic database for proteins and mutants.
Nucleic Acids Res., 2004

Neural network-based prediction of transmembrane -strand segments in outer membrane proteins.
J. Comput. Chem., 2004

<i>ASAView</i>: Database and tool for solvent accessibility representation in proteins.
BMC Bioinform., 2004

Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information.
Bioinform., 2004

Structure-Function Relationship in DNA Sequence Recognition by Transcription Factors.
Proceedings of the Second Asia-Pacific Bioinformatics Conference (APBC 2004), 2004

2003
Importance of Native-State Topology for Determining the Folding Rate of Two-State Proteins.
J. Chem. Inf. Comput. Sci., 2003

Design and training of a neural network for predicting the solvent accessibility of proteins.
J. Comput. Chem., 2003

RVP-net: online prediction of real valued accessible surface area of proteins from single sequences.
Bioinform., 2003

2002
ProTherm, Thermodynamic Database for Proteins and Mutants: developments in version 3.0.
Nucleic Acids Res., 2002

NETASA: neural network based prediction of solvent accessibility.
Bioinform., 2002

2001
Thermodynamic database for protein-nucleic acid interactions (ProNIT).
Bioinform., 2001

2000
ProTherm, version 2.0: thermodynamic database for proteins and mutants.
Nucleic Acids Res., 2000

Multicanonical Monte Carlo calculation of the free-energy map of the base-amino acid interaction.
J. Comput. Chem., 2000

1999
ProTherm: Thermodynamic Database for Proteins and Mutants.
Nucleic Acids Res., 1999


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