M. Michael Gromiha
Orcid: 0000-0002-1776-4096
According to our database1,
M. Michael Gromiha
authored at least 105 papers
between 1999 and 2024.
Collaborative distances:
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Bibliography
2024
Reliable method for predicting the binding affinity of RNA-small molecule interactions using machine learning.
Briefings Bioinform., January, 2024
2023
Briefings Bioinform., September, 2023
Frontiers Bioinform., May, 2023
2022
ProNAB: database for binding affinities of protein-nucleic acid complexes and their mutants.
Nucleic Acids Res., 2022
Understanding the mutational frequency in SARS-CoV-2 proteome using structural features.
Comput. Biol. Medicine, 2022
Ab-CoV: a curated database for binding affinity and neutralization profiles of coronavirus-related antibodies.
Bioinform., 2022
Erratum to: Evaluation of in silico tools for the prediction of protein and peptide aggregation on diverse datasets.
Briefings Bioinform., 2022
Briefings Bioinform., 2022
2021
Guest Editorial for Special Section on the 15<sup>th</sup> International Conference on Intelligent Computing (ICIC).
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
ProThermDB: thermodynamic database for proteins and mutants revisited after 15 years.
Nucleic Acids Res., 2021
Mutations in transmembrane proteins: diseases, evolutionary insights, prediction and comparison with globular proteins.
Briefings Bioinform., 2021
Prediction of protein-carbohydrate complex binding affinity using structural features.
Briefings Bioinform., 2021
Evaluation of in silico tools for the prediction of protein and peptide aggregation on diverse datasets.
Briefings Bioinform., 2021
MPTherm: database for membrane protein thermodynamics for understanding folding and stability.
Briefings Bioinform., 2021
2020
Guest Editorial for Special Section on the 14th International Conference on Intelligent Computing (ICIC).
IEEE ACM Trans. Comput. Biol. Bioinform., 2020
VEPAD - Predicting the effect of variants associated with Alzheimer's disease using machine learning.
Comput. Biol. Medicine, 2020
Insights into changes in binding affinity caused by disease mutations in protein-protein complexes.
Comput. Biol. Medicine, 2020
Multi-omics-based identification of SARS-CoV-2 infection biology and candidate drugs against COVID-19.
Comput. Biol. Medicine, 2020
AggreRATE-Pred: a mathematical model for the prediction of change in aggregation rate upon point mutation.
Bioinform., 2020
ProAffiMuSeq: sequence-based method to predict the binding free energy change of protein-protein complexes upon mutation using functional classification.
Bioinform., 2020
2019
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019
Guest Editorial for Special Section on the 13th International Conference on Intelligent Computing (ICIC).
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
2018
IEEE ACM Trans. Comput. Biol. Bioinform., 2018
Guest Editorial for Special Section on the 12th International Conference on Intelligent Computing (ICIC).
IEEE ACM Trans. Comput. Biol. Bioinform., 2018
Discrimination and Prediction of Protein-Protein Binding Affinity Using Deep Learning Approach.
Proceedings of the Intelligent Computing Theories and Application, 2018
2017
Guest Editorial for Special Section on the 11th International Conference on Intelligent Computing (ICIC).
IEEE ACM Trans. Comput. Biol. Bioinform., 2017
Bioinform., 2017
Influence of Amino Acid Properties for Characterizing Amyloid Peptides in Human Proteome.
Proceedings of the Intelligent Computing Theories and Application, 2017
2016
Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015.
BMC Bioinform., February, 2016
Guest Editorial for Special Section on the 10th International Conference on Intelligent Computing (ICIC).
IEEE ACM Trans. Comput. Biol. Bioinform., 2016
<i>In silico</i> identification of essential proteins in <i>Corynebacterium pseudotuberculosis</i> based on protein-protein interaction networks.
BMC Syst. Biol., 2016
Computational Analysis of Similar Protein-DNA Complexes from Different Organisms to Understand Organism Specific Recognition.
Proceedings of the Intelligent Computing Theories and Application, 2016
2015
Response to the comment on 'protein-protein binding affinity prediction from amino acid sequence'.
Bioinform., 2015
Folding RaCe: a robust method for predicting changes in protein folding rates upon point mutations.
Bioinform., 2015
Development of a Machine Learning Method to Predict Membrane Protein-Ligand Binding Residues Using Basic Sequence Information.
Adv. Bioinformatics, 2015
2014
High throughput computing to improve efficiency of predicting protein stability change upon mutation.
Int. J. Data Min. Bioinform., 2014
Bioinform., 2014
GAP: towards almost 100 percent prediction for β-strand-mediated aggregating peptides with distinct morphologies.
Bioinform., 2014
Briefings Bioinform., 2014
Proceedings of the Intelligent Computing in Bioinformatics - 10th International Conference, 2014
2013
Distinct position-specific sequence features of hexa-peptides that form amyloid-fibrils: application to discriminate between amyloid fibril and amorphous β-aggregate forming peptide sequences.
BMC Bioinform., 2013
Role of Protein Aggregation and Interactions between α-Synuclein and Calbindin in Parkinson's Disease.
Proceedings of the Intelligent Computing Theories and Technology, 2013
2012
Nucleic Acids Res., 2012
J. Comput. Aided Mol. Des., 2012
Relationship between amino acid properties and functional parameters in olfactory receptors and discrimination of mutants with enhanced specificity.
BMC Bioinform., 2012
Introduction: advanced intelligent computing theories and their applications in bioinformatics.
BMC Bioinform., 2012
Proceedings of the Emerging Intelligent Computing Technology and Applications, 2012
2011
Scoring Function Based Approach for Locating Binding Sites and Understanding Recognition Mechanism of Protein-DNA Complexes.
J. Chem. Inf. Model., 2011
Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties.
Bioinform., 2011
Proceedings of the Bio-Inspired Computing and Applications, 2011
2010
Human-Readable Rule Generator for Integrating Amino Acid Sequence Information and Stability of Mutant Proteins.
IEEE ACM Trans. Comput. Biol. Bioinform., 2010
Prediction of membrane spanning segments and topology in beta-barrel membrane proteins at better accuracy.
J. Comput. Chem., 2010
Development of knowledge-based system for predicting the stability of proteins upon point mutations.
Neurocomputing, 2010
First insight into the prediction of protein folding rate change upon point mutation.
Bioinform., 2010
Identification and Analysis of Binding Site Residues in Protein Complexes: Energy Based Approach.
Proceedings of the Advanced Intelligent Computing Theories and Applications, 2010
Topology Prediction of <i>alpha</i>-Helical and <i>beta</i>-Barrel Transmembrane Proteins Using RBF Networks.
Proceedings of the Advanced Intelligent Computing Theories and Applications, 2010
Sequence and structural features of binding site residues in protein-protein complexes.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010
2009
Nucleic Acids Res., 2009
J. Chem. Inf. Model., 2009
Reliable prediction of protein thermostability change upon double mutation from amino acid sequence.
Bioinform., 2009
2008
Analysis and prediction of protein folding rates using quadratic response surface models.
J. Comput. Chem., 2008
TMBETADISC-RBF: Discrimination of beta-barrel membrane proteins using RBF networks and PSSM profiles.
Comput. Biol. Chem., 2008
BMC Bioinform., 2008
Sequence Based Prediction of Protein Mutant Stability and Discrimination of Thermophilic Proteins.
Proceedings of the Pattern Recognition in Bioinformatics, 2008
Proceedings of the International Joint Conference on Neural Networks, 2008
Neural network based prediction of protein structure and Function: Comparison with other machine learning methods.
Proceedings of the International Joint Conference on Neural Networks, 2008
2007
TMBETA-GENOME: database for annotated ß-barrel membrane proteins in genomic sequences.
Nucleic Acids Res., 2007
TMB Finding Pipeline: Novel Approach for Detecting β-Barrel Membrane Proteins in Genomic Sequences.
J. Chem. Inf. Model., 2007
Application of amino acid occurrence for discriminating different folding types of globular proteins.
BMC Bioinform., 2007
Identification of DNA-binding proteins using support vector machines and evolutionary profiles.
BMC Bioinform., 2007
iPTREE-STAB: interpretable decision tree based method for predicting protein stability changes upon mutations.
Bioinform., 2007
Proceedings of the Pattern Recognition in Bioinformatics, 2007
Bioinformatics on beta-Barrel Membrane Proteins: Sequence and Structural Analysis, Discrimination and Prediction.
Proceedings of the Pattern Recognition in Bioinformatics, 2007
2006
Nucleic Acids Res., 2006
ProTherm and ProNIT: thermodynamic databases for proteins and protein-nucleic acid interactions.
Nucleic Acids Res., 2006
Nucleic Acids Res., 2006
A Statistical Method for Predicting Protein Unfolding Rates from Amino Acid Sequence.
J. Chem. Inf. Model., 2006
Knowledge acquisition and development of accurate rules for predicting protein stability changes.
Comput. Biol. Chem., 2006
2005
Nucleic Acids Res., 2005
TMBETA-NET: discrimination and prediction of membrane spanning ß-strands in outer membrane proteins.
Nucleic Acids Res., 2005
A Statistical Model for Predicting Protein Folding Rates from Amino Acid Sequence with Structural Class Information.
J. Chem. Inf. Model., 2005
Integration of Bioinformatics and Computational Biology to Understand Protein-dna Recognition Mechanism.
J. Bioinform. Comput. Biol., 2005
Relative importance of secondary structure and solvent accessibility to the stability of protein mutants.: A case study with amino acid properties and energetics on T4 and human lysozymes.
Comput. Biol. Chem., 2005
Application of residue distribution along the sequence for discriminating outer membrane proteins.
Comput. Biol. Chem., 2005
Bioinform., 2005
A simple statistical method for discriminating outer membrane proteins with better accuracy.
Bioinform., 2005
2004
Nucleic Acids Res., 2004
Neural network-based prediction of transmembrane -strand segments in outer membrane proteins.
J. Comput. Chem., 2004
<i>ASAView</i>: Database and tool for solvent accessibility representation in proteins.
BMC Bioinform., 2004
Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information.
Bioinform., 2004
Structure-Function Relationship in DNA Sequence Recognition by Transcription Factors.
Proceedings of the Second Asia-Pacific Bioinformatics Conference (APBC 2004), 2004
2003
Importance of Native-State Topology for Determining the Folding Rate of Two-State Proteins.
J. Chem. Inf. Comput. Sci., 2003
Design and training of a neural network for predicting the solvent accessibility of proteins.
J. Comput. Chem., 2003
RVP-net: online prediction of real valued accessible surface area of proteins from single sequences.
Bioinform., 2003
2002
ProTherm, Thermodynamic Database for Proteins and Mutants: developments in version 3.0.
Nucleic Acids Res., 2002
2001
Bioinform., 2001
2000
Nucleic Acids Res., 2000
Multicanonical Monte Carlo calculation of the free-energy map of the base-amino acid interaction.
J. Comput. Chem., 2000
1999