Hai-Feng Chen

According to our database, Hai-Feng Chen authored at least 25 papers between 2009 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Multi-indicator comparative evaluation for deep learning-based protein sequence design methods.

Jinyu Yu, Junxi Mu, Ting Wei, Hai-Feng Chen

Bioinform., February, 2024

Graphormer supervised <i>de novo</i> protein design method and function validation.

Junxi Mu, Zhengxin Li, Bo Zhang, Qi Zhang, Jamshed Iqbal, Abdul Wadood, Ting Wei, Yan Feng, Hai-Feng Chen

Briefings Bioinform., 2024

2023

Phanto-IDP: compact model for precise intrinsically disordered protein backbone generation and enhanced sampling.

Junjie Zhu, Zhengxin Li, Haowei Tong, Zhouyu Lu, Ningjie Zhang, Ting Wei, Hai-Feng Chen

Briefings Bioinform., November, 2023

Research and Evaluation of the Allosteric Protein-Specific Force Field Based on a Pre-Training Deep Learning Model.

Xiaoyue Ji, Xiaochen Cui, Zhengxin Li, Taeyoung Choi, Ying Wang, Wen Xiao, Yunshuo Zhao, Jinyin Zha, Jian Zhang, Hai-Feng Chen, Zhengtian Yu

J. Chem. Inf. Model., April, 2023

Phosphorylation Modification Force Field FB18CMAP Improving Conformation Sampling of Phosphoproteins.

Ge Song, Bozitao Zhong, Bo Zhang, Ashfaq Ur Rehman, Hai-Feng Chen

J. Chem. Inf. Model., March, 2023

Phosphorylation Regulation Mechanism of β2 Integrin for the Binding of Filamin Revealed by Markov State Model.

Xiaokun Hong, Kaiyuan Song, Mueed Ur Rahman, Ting Wei, Yan Zhang, Lin-Tai Da, Hai-Feng Chen

J. Chem. Inf. Model., January, 2023

PTMint database of experimentally verified PTM regulation on protein-protein interaction.

Xiaokun Hong, Ningshan Li, Jiyang Lv, Yan Zhang, Jing Li, Jian Zhang, Hai-Feng Chen

Bioinform., January, 2023

Personal Precise Force Field for Intrinsically Disordered and Ordered Proteins Based on Deep Learning.

Xiaoyue Ji, Hao Liu, Yangpeng Zhang, Jun Chen, Hai-Feng Chen

J. Chem. Inf. Model., 2023

Development and Application of Offshore Trade Authenticity Verification Platform Based on Blockchain.

Hai-Feng Chen, Lv Zhang, Shuai Wang, Shan-Shan Shi

Proceedings of the Design Studies and Intelligence Engineering, 2023

2022

Polarizable Force Field of Intrinsically Disordered Proteins with CMAP and Reweighting Optimization.

Xiaochen Cui, Hao Liu, Hai-Feng Chen

J. Chem. Inf. Model., 2022

RNA-Specific Force Field Optimization with CMAP and Reweighting.

Jun Chen, Hao Liu, Xiaochen Cui, Zhengxin Li, Hai-Feng Chen

J. Chem. Inf. Model., 2022

2021

Balanced Solvent Model for Intrinsically Disordered and Ordered Proteins.

Junxi Mu, Zhengsong Pan, Hai-Feng Chen

J. Chem. Inf. Model., 2021

Recent Force Field Strategies for Intrinsically Disordered Proteins.

Junxi Mu, Hao Liu, Jian Zhang, Ray Luo, Hai-Feng Chen

J. Chem. Inf. Model., 2021

2020

Environment-Specific Force Field for Intrinsically Disordered and Ordered Proteins.

Dong Song, Hao Liu, Ray Luo, Hai-Feng Chen

J. Chem. Inf. Model., 2020

Comparison and Evaluation of Force Fields for Intrinsically Disordered Proteins.

Mueed Ur Rahman, Ashfaq Ur Rehman, Hao Liu, Hai-Feng Chen

J. Chem. Inf. Model., 2020

2019

Residue-Specific Force Field Improving the Sample of Intrinsically Disordered Proteins and Folded Proteins.

Sheng Yang, Hao Liu, Yangpeng Zhang, Hui Lu, Hai-Feng Chen

J. Chem. Inf. Model., 2019

Gain-of-Function SHP2 E76Q Mutant Rescuing Autoinhibition Mechanism Associated with Juvenile Myelomonocytic Leukemia.

Ashfaq Ur Rehman, Humaira Rafiq, Mueed Ur Rahman, Jiayi Li, Hao Liu, Shenggan Luo, Taaha Arshad, Abdul Wadood, Hai-Feng Chen

J. Chem. Inf. Model., 2019

Exploring the Pyrazinamide Drug Resistance Mechanism of Clinical Mutants T370P and W403G in Ribosomal Protein S1 ofMycobacterium tuberculosis.

Ashfaq Ur Rehman, Muhammad Tahir Khan, Hao Liu, Abdul Wadood, Shaukat Iqbal Malik, Hai-Feng Chen

J. Chem. Inf. Model., 2019

Dynamical important residue network (DIRN): network inference via conformational change.

Quan Li, Ray Luo, Hai-Feng Chen

Bioinform., 2019

2018

Inhibitory mechanism of 5-bromo-3-indoleacetic acid for non-structural-3 helicase hepatitis C virus with dynamics correlation network analysis.

Mueed Ur Rahman, Ashfaq Ur Rehman, Hao Liu, Hai-Feng Chen

Comput. Biol. Chem., 2018

2017

Allosteric Autoinhibition Pathway in Transcription Factor ERG: Dynamics Network and Mutant Experimental Evaluations.

Wei Ye, Tianle Qian, Hao Liu, Ray Luo, Hai-Feng Chen

J. Chem. Inf. Model., 2017

The IDP-Specific Force Field <i>ff14IDPSFF</i> Improves the Conformer Sampling of Intrinsically Disordered Proteins.

Dong Song, Ray Luo, Hai-Feng Chen

J. Chem. Inf. Model., 2017

2016

Synergistic Allosteric Mechanism of Fructose-1, 6-bisphosphate and Serine for Pyruvate Kinase M2 via Dynamics Fluctuation Network Analysis.

Jingxu Yang, Hao Liu, Xiaorui Liu, Chengbo Gu, Ray Luo, Hai-Feng Chen

J. Chem. Inf. Model., 2016

2015

Test and Evaluation of <i>ff99IDPs</i> Force Field for Intrinsically Disordered Proteins.

Wei Ye, Dingjue Ji, Wei Wang, Ray Luo, Hai-Feng Chen

J. Chem. Inf. Model., 2015

2009

Aggregation mechanism investigation of the GIFQINS cross-beta amyloid fibril.

Hai-Feng Chen

Comput. Biol. Chem., 2009