Falk Schreiber

According to our database1, Falk Schreiber authored at least 117 papers between 1997 and 2020.

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Bibliography

2020
A Study of Mental Maps in Immersive Network Visualization.
CoRR, 2020

2019
10 Reasons to Get Interested in Graph Drawing.
Proceedings of the Computing and Software Science - State of the Art and Perspectives, 2019

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019.
J. Integrative Bioinformatics, 2019

Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.
J. Integrative Bioinformatics, 2019

Mental-Map Preserving Visualisation of Partitioned Networks in Vanted.
J. Integrative Bioinformatics, 2019

JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools.
J. Integrative Bioinformatics, 2019

Visual Analytics for Cheetah Behaviour Analysis.
Proceedings of the 12th International Symposium on Visual Information Communication and Interaction, 2019

TEAMwISE: Synchronised Immersive Environments for Exploration and Analysis of Movement Data.
Proceedings of the 12th International Symposium on Visual Information Communication and Interaction, 2019

Challenges for Brain Data Analysis in VR Environments.
Proceedings of the IEEE Pacific Visualization Symposium, 2019

2018
Immersive Analytics: An Introduction.
Proceedings of the Immersive Analytics, 2018

Immersive Analytics Applications in Life and Health Sciences.
Proceedings of the Immersive Analytics, 2018

ContextuWall: Multi-site collaboration using display walls.
J. Vis. Lang. Comput., 2018

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017.
J. Integrative Bioinformatics, 2018

Heuristic Modeling and 3D Stereoscopic Visualization of a Chlamydomonas reinhardtii Cell.
J. Integrative Bioinformatics, 2018

Clustering with Temporal Constraints on Spatio-Temporal Data of Human Mobility.
CoRR, 2018

3D Modelling and Visualisation of Heterogeneous Cell Membranes in Blender.
Proceedings of the 11th International Symposium on Visual Information Communication and Interaction, 2018

Comparing Sequential and Temporal Patterns from Human Mobility Data for Next-Place Prediction.
Proceedings of the Adjunct Publication of the 26th Conference on User Modeling, 2018

Immersive Analytics - Methodology and Applications in the Life Sciences.
Proceedings of the 13th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications (VISIGRAPP 2018), 2018

2017
Computational miRNomics - Integrative Approaches.
J. Integrative Bioinformatics, 2017

Integration and virtual reality exploration of biomedical data with CmPI and VANTED.
it - Information Technology, 2017

A brief history of COMBINE.
Proceedings of the 2017 Winter Simulation Conference, 2017

MDS-based Visual Survey of Biological Data Visualization Techniques.
Proceedings of the Eurographics Conference on Visualization, 2017

Design Considerations for Immersive Analytics of Bird Movements Obtained by Miniaturised GPS Sensors.
Proceedings of the VCBM 17: Eurographics Workshop on Visual Computing for Biology and Medicine, 2017

Analyse und Aufzeigen von Zusammenhängen.
Proceedings of the 47. Jahrestagung der Gesellschaft für Informatik, 2017

2016
Introduction.
Proceedings of the Modeling in Systems Biology, The Petri Net Approach, 2016

Toward Community Standards and Software for Whole-Cell Modeling.
IEEE Trans. Biomed. Engineering, 2016

Immersive Analytics: A new multidisciplinary initiative to explore future interaction technologies for data analytics (NII Shonan Meeting 2016-2).
NII Shonan Meet. Rep., 2016

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.
J. Integrative Bioinformatics, 2016

Communicating the Effect of Human Behaviour on the Great Barrier Reef via Mixed Reality Visualisation.
Proceedings of the 2016 Big Data Visual Analytics, 2016

ContextuWall: Peer Collaboration Using (Large) Displays.
Proceedings of the 2016 Big Data Visual Analytics, 2016

2015
Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2.
J. Integrative Bioinformatics, 2015

Specifications of Standards in Systems and Synthetic Biology.
J. Integrative Bioinformatics, 2015

Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2 .
J. Integrative Bioinformatics, 2015

A unified framework for estimating parameters of kinetic biological models.
BMC Bioinformatics, 2015

Hybrid-Dimensional Visualization and Interaction - Integrating 2D and 3D Visualization with Semi-Immersive Navigation Techniques.
Proceedings of the Big Data Visual Analytics, 2015

Interactive Geolocational and Coral Compositional Visualisation of Great Barrier Reef Heat Stress Data.
Proceedings of the Big Data Visual Analytics, 2015


2014
BioNetLink - An Architecture for Working with Network Data.
J. Integrative Bioinformatics, 2014

Petri Nets in the Biosciences.
it - Information Technology, 2014

Why Integrate InfoVis and SciVis?: An Example from Systems Biology.
IEEE Computer Graphics and Applications, 2014

Network Visualization for Integrative Bioinformatics.
Proceedings of the Approaches in Integrative Bioinformatics - Towards the Virtual Cell, 2014

2013
Biological Networks.
Proceedings of the Handbook on Graph Drawing and Visualization., 2013

Editorial.
J. Integrative Bioinformatics, 2013

Exploring biological data: Mappings between ontology- and cluster-based representations.
Information Visualization, 2013

Translation of SBGN maps: Process Description to Activity Flow.
BMC Systems Biology, 2013

Path2Models: large-scale generation of computational models from biochemical pathway maps.
BMC Systems Biology, 2013

Conversion of KEGG metabolic pathways to SBGN maps including automatic layout.
BMC Bioinformatics, 2013

An improved constraint filtering technique for inferring hidden states and parameters of a biological model.
Bioinformatics, 2013

OPTIMAS-DW, MetaCrop and VANTED: A Case Study for Data Integration, Curation and Visualisation in Life Sciences.
Proceedings of the Informatik 2013, 2013

Heterogeneous Networks on Multiple Levels.
Proceedings of the Multivariate Network Visualization, 2013

Multivariate Networks in the Life Sciences.
Proceedings of the Multivariate Network Visualization, 2013

2012
MetaCrop 2.0: managing and exploring information about crop plant metabolism.
Nucleic Acids Research, 2012

IDPredictor: predict database links in biomedical database.
J. Integrative Bioinformatics, 2012

Nutrilyzer: A Tool for Deciphering Atomic Stoichiometry of Differentially Expressed Paralogous Proteins.
J. Integrative Bioinformatics, 2012

Guiding the interactive exploration of metabolic pathway interconnections.
Information Visualization, 2012

VANTED v2: a framework for systems biology applications.
BMC Systems Biology, 2012

FluxMap: A VANTED add-on for the visual exploration of flux distributions in biological networks.
BMC Systems Biology, 2012

Software support for SBGN maps: SBGN-ML and LibSBGN.
Bioinformatics, 2012

CentiLib: comprehensive analysis and exploration of network centralities.
Bioinformatics, 2012

Toward the role of interaction in visual analytics.
Proceedings of the Winter Simulation Conference, 2012

Visualization of mappings between the gene ontology and cluster trees.
Proceedings of the Visualization and Data Analysis 2012, 2012

2011
DBE2 - Management of experimental data for the VANTED system.
J. Integrative Bioinformatics, 2011

Das Informationssystem MetaCrop zur Unterstützung systembiologischer Forschung an Kulturpflanzen.
it - Information Technology, 2011

HTPheno: An Image Analysis Pipeline for High-Throughput Plant Phenotyping.
BMC Bioinformatics, 2011

Creating views on integrated multidomain data.
Bioinformatics [ISMB/ECCB], 2011

Visual Analytics of Multimodal Biological Data.
Proceedings of the IMAGAPP & IVAPP 2011, 2011

Integration and exploration of biological networks.
Proceedings of the Informatik 2011: Informatik schafft Communities, 2011

2010
Integration of -omics data and networks for biomedical research with VANTED.
J. Integrative Bioinformatics, 2010

Novel Developments of the MetaCrop Information System for Facilitating Systems Biological Approaches.
J. Integrative Bioinformatics, 2010

Fast multi-core based multimodal registration of 2D cross-sections and 3D datasets.
BMC Bioinformatics, 2010

Editing, validating and translating of SBGN maps.
Bioinformatics, 2010

2009
Analyse und Visualisierung biologischer Netzwerke.
Informatik Spektrum, 2009

A generic algorithm for layout of biological networks.
BMC Bioinformatics, 2009

Kavosh: a new algorithm for finding network motifs.
BMC Bioinformatics, 2009

FBA-SimVis: interactive visualization of constraint-based metabolic models.
Bioinformatics, 2009

Multimodal Registration of NMR-volumes and Histological Cross-sections of Barley Grains on the Cell Broadband Engine Processor.
Proceedings of the VISAPP 2009 - Proceedings of the Fourth International Conference on Computer Vision Theory and Applications, Lisboa, Portugal, February 5-8, 2009, 2009

Visual Analysis of Overlapping Biological Networks.
Proceedings of the 13th International Conference on Information Visualisation, 2009

Datenaustausch und Datenintegration zur Modellierung und Analyse metabolischer Netzwerke am Beispiel von Kulturpflanzen.
Proceedings of the Informatik 2009: Im Focus das Leben, 2009

On Open Problems in Biological Network Visualization.
Proceedings of the Graph Drawing, 17th International Symposium, 2009

Integration and Visualisation of Multimodal Biological Data.
Proceedings of the German Conference on Bioinformatics 2009, 2009

CUDA-based Multi-core Implementation of MDS-based Bioinformatics Algorithms.
Proceedings of the German Conference on Bioinformatics 2009, 2009

An Integration and Analysis Pipeline for Systems Biology in Crop Plant Metabolism.
Proceedings of the Data Integration in the Life Sciences, 6th International Workshop, 2009

2008
Exploration of Networks using overview+detail with Constraint-based cooperative layout.
IEEE Trans. Vis. Comput. Graph., 2008

MetaCrop: a detailed database of crop plant metabolism.
Nucleic Acids Research, 2008

2.5D Visualisation of Overlapping Biological Networks.
J. Integrative Bioinformatics, 2008

Modularization of biochemical networks based on classification of Petri net t-invariants.
BMC Bioinformatics, 2008

2007
Community-based Linking of Biological Network Resources: Databases, Formats and Tools.
J. Integrative Bioinformatics, 2007

Dynamic exploration and editing of KEGG pathway diagrams.
Bioinformatics, 2007

2006
Kinetic Modelling with the Systems Biology Modelling Environment SyBME.
J. Integrative Bioinformatics, 2006

Meta-All: a system for managing metabolic pathway information.
BMC Bioinformatics, 2006

Exploration of biological network centralities with CentiBiN.
BMC Bioinformatics, 2006

VANTED: A system for advanced data analysis and visualization in the context of biological networks.
BMC Bioinformatics, 2006

Coordinated perspectives and enhanced force-directed layout for the analysis of network motifs.
Proceedings of the Asia-Pacific Symposium on Information Visualisation, 2006

Visual analysis of network centralities.
Proceedings of the Asia-Pacific Symposium on Information Visualisation, 2006

2005
Frequency Concepts and Pattern Detection for the Analysis of Motifs in Networks.
, 2005

Graph Pattern Analysis with PatternGravisto.
J. Graph Algorithms Appl., 2005

MAVisto: a tool for the exploration of network motifs.
Bioinformatics, 2005

2004
Visual Understanding of Metabolic Pathways Across Organisms Using Layout in Two and a Half Dimensions.
J. Integrative Bioinformatics, 2004

Integrating data from biological experiments into metabolic networks with the DBE information system.
In Silico Biology, 2004

Visual Triangulation of Network-Based Phylogenetic Trees.
Proceedings of the VisSym 2004, 2004

Comparison of Centralities for Biological Networks.
Proceedings of the German Conference on Bioinformatics (GCB 2004), Bielefeld, 2004

Optimal Leaf Ordering for Two and a Half Dimensional Phylogenetic Tree Visualisation.
Proceedings of the Australasian Symposium on Information Visualisation, 2004

Representing Experimental Biological Data in Metabolic Networks.
Proceedings of the Second Asia-Pacific Bioinformatics Conference (APBC 2004), 2004

Flexible Layering in Hierarchical Drawings with Nodes of Arbitrary Size.
Proceedings of the Computer Science 2004, 2004

BioPath - Exploration and Visualization of Biochemical Pathways.
Proceedings of the Graph Drawing Software, 2004

2003
Visual comparison of metabolic pathways.
J. Vis. Lang. Comput., 2003

Visualizing Related Metabolic Pathways in Two and a Half Dimensions.
Proceedings of the Graph Drawing, 11th International Symposium, 2003

Comparison of Metabolic Pathways using Constraint Graph Drawing.
Proceedings of the First Asia-Pacific Bioinformatics Conference (APBC 2003), 2003

2002
High quality visualization of biochemical pathways in BioPath.
In Silico Biology, 2002

The system architecture of the BioPath system.
In Silico Biology, 2002

2001
BioPath.
Proceedings of the Graph Drawing, 9th International Symposium, 2001

BioPath Visualization of Biochemical Pathways.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

1999
Electronic Biochemical Pathways.
Proceedings of the Graph Drawing, 7th International Symposium, 1999

Graph-Drawing Contest Report.
Proceedings of the Graph Drawing, 7th International Symposium, 1999

Interactive Biochemical Pathways.
Proceedings of the German Conference on Bioinformatics, 1999

1998
NP-Completeness of Some Tree-Clustering Problems.
Proceedings of the Graph Drawing, 6th International Symposium, 1998

1997
Graphs in METAFrame: The Unifying Power of Polymorphism.
Proceedings of the Tools and Algorithms for Construction and Analysis of Systems, 1997


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