Fabrizio Costa

According to our database, Fabrizio Costa authored at least 52 papers between 1999 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2020

Heterogeneous networks integration for disease-gene prioritization with node kernels.

Dinh Van Tran, Alessandro Sperduti, Rolf Backofen, Fabrizio Costa

Bioinform., 2020

2019

ShaKer: RNA SHAPE prediction using graph kernel.

Stefan Mautner, Soheila Montaseri, Milad Miladi, Martin Raden, Fabrizio Costa, Rolf Backofen

Bioinform., 2019

Progress Towards Graph Optimization: Efficient Learning of Vector to Graph Space Mappings.

Stefan Mautner, Rolf Backofen, Fabrizio Costa

Proceedings of the 27th European Symposium on Artificial Neural Networks, 2019

2018

Freiburg RNA tools: a central online resource for RNA-focused research and teaching.

Martin Raden, Syed M. Ali, Omer S. Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A. Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen Lott, Mostafa M. Mohamed, Alexander Mattheis, Milad Miladi, Andreas S. Richter, Sebastian Will, Joachim Wolff, Patrick R. Wright, Rolf Backofen

Nucleic Acids Res., 2018

The conjunctive disjunctive graph node kernel for disease gene prioritization.

Dinh Tran-Van, Alessandro Sperduti, Fabrizio Costa

Neurocomputing, 2018

2017

An efficient graph kernel method for non-coding RNA functional prediction.

Nicolò Navarin, Fabrizio Costa

Bioinform., 2017

RNAscClust: clustering RNA sequences using structure conservation and graph based motifs.

Milad Miladi, Alexander Junge, Fabrizio Costa, Stefan E. Seemann, Jakob Hull Havgaard, Jan Gorodkin, Rolf Backofen

Bioinform., 2017

Learning an efficient constructive sampler for graphs.

Fabrizio Costa

Artif. Intell., 2017

Joint Neighborhood Subgraphs Link Prediction.

Dinh Tran-Van, Alessandro Sperduti, Fabrizio Costa

Proceedings of the Neural Information Processing - 24th International Conference, 2017

Link Enrichment for Diffusion-Based Graph Node Kernels.

Dinh Tran-Van, Alessandro Sperduti, Fabrizio Costa

Proceedings of the Artificial Neural Networks and Machine Learning - ICANN 2017, 2017

The Conjunctive Disjunctive Node Kernel.

Dinh Tran-Van, Alessandro Sperduti, Fabrizio Costa

Proceedings of the 25th European Symposium on Artificial Neural Networks, 2017

Fast hyperparameter selection for graph kernels via subsampling and multiple kernel learning.

Michele Donini, Nicolò Navarin, Ivano Lauriola, Fabio Aiolli, Fabrizio Costa

Proceedings of the 25th European Symposium on Artificial Neural Networks, 2017

2016

SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification.

João Victor de Araújo Oliveira, Fabrizio Costa, Rolf Backofen, Peter F. Stadler, Maria Emília Telles Walter, Jana Hertel

BMC Bioinform., 2016

RNAcommender: genome-wide recommendation of RNA-protein interactions.

Gianluca Corrado, Toma Tebaldi, Fabrizio Costa, Paolo Frasconi, Andrea Passerini

Bioinform., 2016

Characterizing leader sequences of CRISPR loci.

Omer S. Alkhnbashi, Shiraz A. Shah, Roger A. Garrett, Sita J. Saunders, Fabrizio Costa, Rolf Backofen

Bioinform., 2016

AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments.

Phuong Dao, Jan Hoinka, Yijie Wang, Mayumi Takahashi, Jiehua Zhou, Fabrizio Costa, John Rossi, John Burnett, Rolf Backofen, Teresa M. Przytycka

Proceedings of the Research in Computational Molecular Biology - 20th Annual Conference, 2016

RNAsynth: constraints learning for RNA inverse folding.

Fabrizio Costa, Parastou Kohvaei, Robert Kleinkauf

Proceedings of the 24th European Symposium on Artificial Neural Networks, 2016

2015

ASSIsT: an automatic SNP scoring tool for in- and outbreeding species.

Mario Di Guardo, Diego Micheletti, Luca Bianco, Herma J. J. Koehorst-van Putten, Sara Longhi, Fabrizio Costa, Maria José Aranzana, Riccardo Velasco, Pere Arús, Michela Troggio, Eric W. van de Weg

Bioinform., 2015

kLog: A Language for Logical and Relational Learning with Kernels (Extended Abstract).

Paolo Frasconi, Fabrizio Costa, Luc De Raedt, Kurt De Grave

Proceedings of the Twenty-Fourth International Joint Conference on Artificial Intelligence, 2015

2014

BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles.

Pavankumar Videm, Dominic Rose, Fabrizio Costa, Rolf Backofen

Bioinform., 2014

MoDPepInt: an interactive web server for prediction of modular domain-peptide interactions.

Kousik Kundu, Martin Mann, Fabrizio Costa, Rolf Backofen

Bioinform., 2014

CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci.

Omer S. Alkhnbashi, Fabrizio Costa, Shiraz A. Shah, Roger A. Garrett, Sita J. Saunders, Rolf Backofen

Bioinform., 2014

kLog: A language for logical and relational learning with kernels.

Paolo Frasconi, Fabrizio Costa, Luc De Raedt, Kurt De Grave

Artif. Intell., 2014

Relational Regularization and Feature Ranking.

Fabrizio Costa, Mathias Verbeke, Luc De Raedt

Proceedings of the 2014 SIAM International Conference on Data Mining, 2014

Scalable structural clustering of local RNA secondary structures.

Fabrizio Costa, Steffen Heyne, Dominic Rose, Rolf Backofen

Proceedings of the 1st Workshop on Computational Methods for Structural RNAs (CMSR 2014), 2014

kLogNLP: Graph Kernel-based Relational Learning of Natural Language.

Mathias Verbeke, Paolo Frasconi, Kurt De Grave, Fabrizio Costa, Luc De Raedt

Proceedings of the 52nd Annual Meeting of the Association for Computational Linguistics, 2014

2013

A graph kernel approach for alignment-free domain-peptide interaction prediction with an application to human SH3 domains.

Kousik Kundu, Fabrizio Costa, Rolf Backofen

Bioinform., 2013

2012

Link and Node Prediction in Metabolic Networks with Probabilistic Logic.

Angelika Kimmig, Fabrizio Costa

Proceedings of the Bisociative Knowledge Discovery, 2012

GraphClust: alignment-free structural clustering of local RNA secondary structures.

Steffen Heyne, Fabrizio Costa, Dominic Rose, Rolf Backofen

Bioinform., 2012

A Relational Kernel-Based Framework for Hierarchical Image Understanding.

Laura Antanas, Paolo Frasconi, Fabrizio Costa, Tinne Tuytelaars, Luc De Raedt

Proceedings of the Structural, Syntactic, and Statistical Pattern Recognition, 2012

2011

Effective feature construction by maximum common subgraph sampling.

Leander Schietgat, Fabrizio Costa, Jan Ramon, Luc De Raedt

Mach. Learn., 2011

Preface.

Jan Ramon, Fabrizio Costa, Christophe Costa Florêncio, Joost N. Kok

Fundam. Informaticae, 2011

Random Forest Based Feature Induction.

Celine Vens, Fabrizio Costa

Proceedings of the 11th IEEE International Conference on Data Mining, 2011

2010

Molecular Graph Augmentation with Rings and Functional Groups.

Kurt De Grave, Fabrizio Costa

J. Chem. Inf. Model., 2010

Fast Neighborhood Subgraph Pairwise Distance Kernel.

Fabrizio Costa, Kurt De Grave

Proceedings of the 27th International Conference on Machine Learning (ICML-10), 2010

2009

StReBio'09: statistical relational learning and mining in bioinformatics.

Jan Ramon, Fabrizio Costa, Christophe Costa Florêncio, Joost N. Kok

SIGKDD Explor., 2009

Handling missing values and censored data in PCA of pharmacological matrices.

Jan Ramon, Fabrizio Costa

Proceedings of the ACM SIGKDD Workshop on Statistical and Relational Learning in Bioinformatics, 2009

2008

A semiparametric generative model for efficient structured-output supervised learning.

Fabrizio Costa, Andrea Passerini, Marco Lippi, Paolo Frasconi

Ann. Math. Artif. Intell., 2008

Towards Combining Structured Pattern Mining and Graph Kernels.

Fabrizio Costa, Björn Bringmann

Proceedings of the Workshops Proceedings of the 8th IEEE International Conference on Data Mining (ICDM 2008), 2008

On the Convergence of Protein Structure and Dynamics. Statistical Learning Studies of Pseudo Folding Pathways.

Alessandro Vullo, Andrea Passerini, Paolo Frasconi, Fabrizio Costa, Gianluca Pollastri

Proceedings of the Evolutionary Computation, 2008

2007

Comparing Sequence Classification Algorithms for Protein Subcellular Localization.

Fabrizio Costa, Sauro Menchetti, Paolo Frasconi

Proceedings of the Perspectives of Neural-Symbolic Integration, 2007

Classification of small molecules by two- and three-dimensional decomposition kernels.

Alessio Ceroni, Fabrizio Costa, Paolo Frasconi

Bioinform., 2007

2006

Decomposition Kernels for Natural Language Processing.

Fabrizio Costa, Sauro Menchetti, Alessio Ceroni, Andrea Passerini, Paolo Frasconi

Proceedings of the Workshop on Learning Structured Information in Natural Language Applications@EACL 2006, 2006

2005

Ambiguity resolution analysis in incremental parsing of natural language.

Fabrizio Costa, Paolo Frasconi, Vincenzo Lombardo, Patrick Sturt, Giovanni Soda

IEEE Trans. Neural Networks, 2005

Wide coverage natural language processing using kernel methods and neural networks for structured data.

Sauro Menchetti, Fabrizio Costa, Paolo Frasconi, Massimiliano Pontil

Pattern Recognit. Lett., 2005

Weighted decomposition kernels.

Sauro Menchetti, Fabrizio Costa, Paolo Frasconi

Proceedings of the Machine Learning, 2005

2004

Distributed community crawling.

Fabrizio Costa, Paolo Frasconi

Proceedings of the 13th international conference on World Wide Web, 2004

2003

Towards Incremental Parsing of Natural Language Using Recursive Neural Networks.

Fabrizio Costa, Paolo Frasconi, Vincenzo Lombardo, Giovanni Soda

Appl. Intell., 2003

2002

Enhancing First-Pass Attachment Prediction.

Fabrizio Costa, Paolo Frasconi, Vincenzo Lombardo, Patrick Sturt, Giovanni Soda

Proceedings of the 15th European Conference on Artificial Intelligence, 2002

2001

Wide Coverage Incremental Parsing by Learning Attachment Preferences.

Fabrizio Costa, Vincenzo Lombardo, Paolo Frasconi, Giovanni Soda

Proceedings of the AI*IA 2001: Advances in Artificial Intelligence, 2001

2000

Learning incremental syntactic structures with recursive neural networks.

Fabrizio Costa, Paolo Frasconi, Vincenzo Lombardo, Giovanni Soda

Proceedings of the Fourth International Conference on Knowledge-Based Intelligent Information Engineering Systems & Allied Technologies, 2000

1999

A topological transformation for hidden recursive modelsarchitecture networks.

Fabrizio Costa, Paolo Frasconi, Giovanni Soda

Proceedings of the 7th European Symposium on Artificial Neural Networks, 1999