Jie Liang
Orcid: 0000-0002-2773-6427Affiliations:
- University of Illinois at Chicago, Department of Bioengineering, IL, USA
According to our database1,
Jie Liang
authored at least 44 papers
between 2003 and 2023.
Collaborative distances:
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Bibliography
2023
Structure-based pathogenicity relationship identifier for predicting effects of single missense variants and discovery of higher-order cancer susceptibility clusters of mutations.
Briefings Bioinform., July, 2023
Predicting Pathology of Missense Mutations through Protein-Specific Evolutionary Pattern.
Proceedings of the 45th Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2023
2022
J. Comput. Phys., 2022
2021
Modeling and simulation of nuclear architecture reorganization process using a phase field approach.
CoRR, 2021
Inferring initial state of the ancestral network of cellular fate decision: a case study of phage lambda.
Proceedings of the 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2021
2019
Guest Editorial on the Special Issue on Integrating Informatics and Technology for Precision Medicine.
IEEE J. Biomed. Health Informatics, 2019
Evolution of coagulation-fragmentation stochastic processes using accurate chemical master equation approach.
Commun. Inf. Syst., 2019
Proceedings of the 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2019
Proceedings of the 2019 IEEE EMBS International Conference on Biomedical & Health Informatics, 2019
Proceedings of the 2019 IEEE EMBS International Conference on Biomedical & Health Informatics, 2019
Proceedings of the 2019 IEEE EMBS International Conference on Biomedical & Health Informatics, 2019
2018
Nucleic Acids Res., 2018
Proceedings of the 2018 IEEE EMBS International Conference on Biomedical & Health Informatics, 2018
On quantification of geometry and topology of protein pockets and channels for assessing mutation effects.
Proceedings of the 2018 IEEE EMBS International Conference on Biomedical & Health Informatics, 2018
2017
Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model.
PLoS Comput. Biol., 2017
PRODIGEN: visualizing the probability landscape of stochastic gene regulatory networks in state and time space.
BMC Bioinform., 2017
Efficient computation of transfer free energies of amino acids in beta-barrel membrane proteins.
Bioinform., 2017
2016
Multiscale Model. Simul., 2016
Mechanisms of stochastic focusing and defocusing in biological reaction networks: Insight from accurate Chemical Master Equation (ACME) solutions.
Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2016
2015
2014
Fast Protein Loop Sampling and Structure Prediction Using Distance-Guided Sequential Chain-Growth Monte Carlo Method.
PLoS Comput. Biol., 2014
Proceedings of the 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014
Exact computation of probability landscape of stochastic networks of Single Input and Coupled Toggle Switch Modules.
Proceedings of the 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014
Proceedings of the 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014
Proceedings of the 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014
2013
IEEE Trans. Biomed. Eng., 2013
Proceedings of the 2013 IEEE International Symposium on Parallel & Distributed Processing, 2013
Dynamic mechanical finite element model of biological cells for studying cellular pattern formation.
Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013
Modeling spatial population dynamics of stem cell lineage in wound healing and cancerogenesis.
Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013
2011
Proceedings of the International Conference on Computational Science, 2011
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011
2009
Computational Cellular Dynamics Based on the Chemical Master Equation: A Challenge for Understanding Complexity.
J. Comput. Sci. Technol., 2009
2008
Novel Approach to Structure-Based Pharmacophore Search Using Computational Geometry and Shape Matching Techniques.
J. Chem. Inf. Model., 2008
Optimal enumeration of state space of finitely buffered stochastic molecular networks and exact computation of steady state landscape probability.
BMC Syst. Biol., 2008
2007
Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007
2006
CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues.
Nucleic Acids Res., 2006
Automated method for predicting enzyme functional surfaces and locating key residues with accuracy and specificity.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006
2004
topoSNP: a topographic database of non-synonymous single nucleotide polymorphisms with and without known disease association.
Nucleic Acids Res., 2004
pvSOAR: detecting similar surface patterns of pocket and void surfaces of amino acid residues on proteins.
Nucleic Acids Res., 2004
2003