Jiye Shi

Orcid: 0000-0002-9628-8680

According to our database1, Jiye Shi authored at least 26 papers between 2001 and 2022.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Links

Online presence:

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Bibliography

2022
Mechano-fluorescence actuation in single synaptic vesicles with a DNA framework nanomachine.
Sci. Robotics, 2022

2021
Public Baseline and shared response structures support the theory of antibody repertoire functional commonality.
PLoS Comput. Biol., 2021

The Promise of AI for DILI Prediction.
Frontiers Artif. Intell., 2021

Co-evolutionary distance predictions contain flexibility information.
Bioinform., 2021

2020
Thera-SAbDab: the Therapeutic Structural Antibody Database.
Nucleic Acids Res., 2020

TCRBuilder: multi-state T-cell receptor structure prediction.
Bioinform., 2020

2019
Underestimated Noncovalent Interactions in Protein Data Bank.
J. Chem. Inf. Model., 2019

D3Pockets: A Method and Web Server for Systematic Analysis of Protein Pocket Dynamics.
J. Chem. Inf. Model., 2019

2018
Sequential search leads to faster, more efficient fragment-based de novo protein structure prediction.
Bioinform., 2018

Predicting loop conformational ensembles.
Bioinform., 2018

2017
Underestimated Halogen Bonds Forming with Protein Backbone in Protein Data Bank.
J. Chem. Inf. Model., July, 2017

Comparing co-evolution methods and their application to template-free protein structure prediction.
Bioinform., 2017

Sphinx: merging knowledge-based and ab initio approaches to improve protein loop prediction.
Bioinform., 2017

2015
The Cloudlet Accelerator: Bringing Mobile-Cloud Face Recognition into Real-Time.
Proceedings of the 2015 IEEE Globecom Workshops, San Diego, CA, USA, December 6-10, 2015, 2015

2014
Examining Variable Domain Orientations in Antigen Receptors Gives Insight into TCR-Like Antibody Design.
PLoS Comput. Biol., 2014

SAbDab: the structural antibody database.
Nucleic Acids Res., 2014

Crowdsourcing Yields a New Standard for Kinks in Protein Helices.
J. Chem. Inf. Model., 2014

Improving B-cell epitope prediction and its application to global antibody-antigen docking.
Bioinform., 2014

Use of Network Latency Profiling and Redundancy for Cloud Server Selection.
Proceedings of the 2014 IEEE 7th International Conference on Cloud Computing, Anchorage, AK, USA, June 27, 2014

2013
Memoir: template-based structure prediction for membrane proteins.
Nucleic Acids Res., 2013

Mobile computing - A green computing resource.
Proceedings of the 2013 IEEE Wireless Communications and Networking Conference (WCNC), 2013

2011
Environment specific substitution tables improve membrane protein alignment.
Bioinform., 2011

2010
MEDELLER: homology-based coordinate generation for membrane proteins.
Bioinform., 2010

2009
iMembrane: homology-based membrane-insertion of proteins.
Bioinform., 2009

2003
DDBASE2.0: updated domain database with improved identification of structural domains.
Bioinform., 2003

2001
HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families.
Bioinform., 2001


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