Alex Bateman

According to our database1, Alex Bateman authored at least 98 papers between 1998 and 2022.

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Bibliography

2022
The European Bioinformatics Institute (EMBL-EBI) in 2021.
Nucleic Acids Res., 2022

A roadmap for the functional annotation of protein families: a community perspective.
Database J. Biol. Databases Curation, 2022

2021
Ten simple rules to make your computing more environmentally sustainable.
PLoS Comput. Biol., 2021

RNAcentral 2021: secondary structure integration, improved sequence search and new member databases.
Nucleic Acids Res., 2021

Pfam: The protein families database in 2021.
Nucleic Acids Res., 2021

Rfam 14: expanded coverage of metagenomic, viral and microRNA families.
Nucleic Acids Res., 2021

The Gene Ontology resource: enriching a GOld mine.
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Nucleic Acids Res., 2021

The InterPro protein families and domains database: 20 years on.
Nucleic Acids Res., 2021

UniProt: the universal protein knowledgebase in 2021.
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Nucleic Acids Res., 2021

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
Briefings Bioinform., 2021

2020
The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences.
Bioinform., 2020

2019
The Pfam protein families database in 2019.
Nucleic Acids Res., 2019

TADOSS: computational estimation of tandem domain swap stability.
Bioinform., 2019

2018
The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database.
Nucleic Acids Res., 2018

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families.
Nucleic Acids Res., 2018

2017
InterPro in 2017 - beyond protein family and domain annotations.
Nucleic Acids Res., 2017

On expert curation and scalability: UniProtKB/Swiss-Prot as a case study.
Bioinform., 2017

2016
The Pfam protein families database: towards a more sustainable future.
Nucleic Acids Res., 2016

UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB.
Bioinform., 2016

Crowdsourcing Protein Family Database Curation.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

2015
Rfam 12.0: updates to the RNA families database.
Nucleic Acids Res., 2015

The InterPro protein families database: the classification resource after 15 years.
Nucleic Acids Res., 2015

HMMER web server: 2015 update.
Nucleic Acids Res., 2015

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.
Database J. Biol. Databases Curation, 2015

2014
TreeFam v9: a new website, more species and orthology-on-the-fly.
Nucleic Acids Res., 2014

<i>MEROPS</i>: the database of proteolytic enzymes, their substrates and inhibitors.
Nucleic Acids Res., 2014

iPfam: a database of protein family and domain interactions found in the Protein Data Bank.
Nucleic Acids Res., 2014

Pfam: the protein families database.
Nucleic Acids Res., 2014

Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis.
BMC Bioinform., 2014

2013
ISCB Computational Biology Wikipedia Competition.
PLoS Comput. Biol., 2013

Rfam 11.0: 10 years of RNA families.
Nucleic Acids Res., 2013

LUD, a new protein domain associated with lactate utilization.
BMC Bioinform., 2013

Filling out the structural map of the NTF2-like superfamily.
BMC Bioinform., 2013

Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila.
BMC Bioinform., 2013

The challenge of increasing Pfam coverage of the human proteome.
Database J. Biol. Databases Curation, 2013

DATABASE, <i>The Journal of Biological Databases and Curation</i>, is now the official journal of the International Society for Biocuration.
Database J. Biol. Databases Curation, 2013

2012
<i>MEROPS</i>: the database of proteolytic enzymes, their substrates and inhibitors.
Nucleic Acids Res., 2012

The Pfam protein families database.
Nucleic Acids Res., 2012

InterPro in 2011: new developments in the family and domain prediction database.
Nucleic Acids Res., 2012

Making your database available through Wikipedia: the pros and cons.
Nucleic Acids Res., 2012

Bioimage informatics: a new category in <i>Bioinformatics</i>.
Bioinform., 2012

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference.
Database J. Biol. Databases Curation, 2012

AntiFam: a tool to help identify spurious ORFs in protein annotation.
Database J. Biol. Databases Curation, 2012

Biocurators and Biocuration: surveying the 21st century challenges.
Database J. Biol. Databases Curation, 2012

2011
Rfam: Wikipedia, clans and the "decimal" release.
Nucleic Acids Res., 2011

The rise and fall of supervised machine learning techniques.
Bioinform., 2011

Towards BioDBcore: a community-defined information specification for biological databases.
Database J. Biol. Databases Curation, 2011

2010
Ten Simple Rules for Editing Wikipedia.
PLoS Comput. Biol., 2010

MEROPS: the peptidase database.
Nucleic Acids Res., 2010

The Pfam protein families database.
Nucleic Acids Res., 2010

Curators of the world unite: the International Society of Biocuration.
Bioinform., 2010

2009
Ten Simple Rules for Chairing a Scientific Session.
PLoS Comput. Biol., 2009

InterPro: the integrative protein signature database.
Nucleic Acids Res., 2009

Rfam: updates to the RNA families database.
Nucleic Acids Res., 2009

Cloud computing.
Bioinform., 2009

Editorial.
Bioinform., 2009

Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors.
Bioinform., 2009

2008
The Pfam protein families database.
Nucleic Acids Res., 2008

Databases, data tombs and dust in the wind.
Bioinform., 2008

Pfam 10 years on: 10 000 families and still growing.
Briefings Bioinform., 2008

2007
New developments in the InterPro database.
Nucleic Acids Res., 2007

Editorial.
Nucleic Acids Res., 2007

Reuse of structural domain-domain interactions in protein networks.
BMC Bioinform., 2007

Predicting active site residue annotations in the Pfam database.
BMC Bioinform., 2007

Editorial.
Bioinform., 2007

SCOOP: a simple method for identification of novel protein superfamily relationships.
Bioinform., 2007

2006
miRBase: microRNA sequences, targets and gene nomenclature.
Nucleic Acids Res., 2006

Pfam: clans, web tools and services.
Nucleic Acids Res., 2006

Software patents in Bioinformatics.
Bioinform., 2006

Structural genomics meets computational biology.
Bioinform., 2006

Bioinformatics - The new home for protein sequence motifs.
Bioinform., 2006

2005
InterPro, progress and status in 2005.
Nucleic Acids Res., 2005

Rfam: annotating non-coding RNAs in complete genomes.
Nucleic Acids Res., 2005

Increasing the Impact of <i>Bioinformatics</i>.
Bioinform., 2005

Visualizing profile-profile alignment: pairwise HMM logos.
Bioinform., 2005

iPfam: visualization of protein?Cprotein interactions in PDB at domain and amino acid resolutions.
Bioinform., 2005

An update from the <i>Bioinformatics</i> Editors.
Bioinform., 2005

The G5 domain: a potential N-acetylglucosamine recognition domain involved in biofilm formation.
Bioinform., 2005

2004
The Pfam protein families database.
Nucleic Acids Res., 2004

The Hotdog fold: wrapping up a superfamily of thioesterases and dehydratases.
BMC Bioinform., 2004

Enhanced protein domain discovery using taxonomy.
BMC Bioinform., 2004

New Leadership for Bioinformatics.
Bioinform., 2004

2003
The InterPro Database, 2003 brings increased coverage and new features.
Nucleic Acids Res., 2003

Rfam: an RNA family database.
Nucleic Acids Res., 2003

A comparison of Pfam and MEROPS: Two databases, one comprehensive, and one specialised.
BMC Bioinform., 2003

The TROVE module: A common element in Telomerase, Ro and Vault ribonucleoproteins.
BMC Bioinform., 2003

2002
The Pfam Protein Families Database.
Nucleic Acids Res., 2002

The SGS3 protein involved in PTGS finds a family.
BMC Bioinform., 2002

QuickTree: building huge Neighbour-Joining trees of protein sequences.
Bioinform., 2002

The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs.
Bioinform., 2002

InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites
Briefings Bioinform., 2002

HMM-based databases in InterPro.
Briefings Bioinform., 2002

2001
The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Nucleic Acids Res., 2001

HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families.
Bioinform., 2001

2000
The Pfam Protein Families Database.
Nucleic Acids Res., 2000

InterPro-an integrated documentation resource for protein families, domains and functional sites.
Bioinform., 2000

1999
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins.
Nucleic Acids Res., 1999

1998
Pfam: multiple sequence alignments and HMM-profiles of protein domains.
Nucleic Acids Res., 1998


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