Shoshana J. Wodak

According to our database, Shoshana J. Wodak authored at least 25 papers between 1997 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies.

Vaishali P. Waman, Neeladri Sen, Mihaly Varadi, Antoine Daina, Shoshana J. Wodak, Vincent Zoete, Sameer Velankar, Christine A. Orengo

Briefings Bioinform., 2021

2018

Submit a Topic Page to PLOS Computational Biology and Wikipedia.

Daniel Mietchen, Shoshana J. Wodak, Szymon Wasik, Natalia Szostak, Christophe Dessimoz

PLoS Comput. Biol., 2018

2012

Topic Pages: <i>PLoS Computational Biology</i> Meets Wikipedia.

Shoshana J. Wodak, Daniel Mietchen, Andrew M. Collings, Robert B. Russell, Philip E. Bourne

PLoS Comput. Biol., 2012

Savant Genome Browser 2: visualization and analysis for population-scale genomics.

Marc Fiume, Eric J. M. Smith, Andrew Brook, Dario Strbenac, Brian Turner, Aziz M. Mezlini, Mark D. Robinson, Shoshana J. Wodak, Michael Brudno

Nucleic Acids Res., 2012

2011

DAnCER: Disease-Annotated Chromatin Epigenetics Resource.

Andrei L. Turinsky, Brian Turner, Rosanne C. Borja, James A. Gleeson, Michael Heath, Shuye Pu, Thomas Switzer, Dong Dong, Yunchen Gong, Tuan On, Xuejian Xiong, Andrew Emili, Jack Greenblatt, John Parkinson, Zhaolei Zhang, Shoshana J. Wodak

Nucleic Acids Res., 2011

OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms.

Yanqi Hao, Anna Merkoulovitch, James Vlasblom, Shuye Pu, Andrei L. Turinsky, Denitza Roudeva, Brian Turner, Jack Greenblatt, Shoshana J. Wodak

Bioinform., 2011

2010

iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence.

Brian Turner, Sabry Razick, Andrei L. Turinsky, James Vlasblom, Edgard K. Crowdy, Emerson Cho, Kyle Morrison, Ian M. Donaldson, Shoshana J. Wodak

Database J. Biol. Databases Curation, 2010

Literature curation of protein interactions: measuring agreement across major public databases.

Andrei L. Turinsky, Sabry Razick, Brian Turner, Ian M. Donaldson, Shoshana J. Wodak

Database J. Biol. Databases Curation, 2010

2009

Markov clustering versus affinity propagation for the partitioning of protein interaction graphs.

James Vlasblom, Shoshana J. Wodak

BMC Bioinform., 2009

2008

LigASite - a database of biologically relevant binding sites in proteins with known <i>apo</i>-structures.

Benoit H. Dessailly, Marc F. Lensink, Christine A. Orengo, Shoshana J. Wodak

Nucleic Acids Res., 2008

Local coherence in genetic interaction patterns reveals prevalent functional versatility.

Shuye Pu, Karen Ronen, James Vlasblom, Jack Greenblatt, Shoshana J. Wodak

Bioinform., 2008

2007

Recognizing protein-protein interfaces with empirical potentials and reduced amino acid alphabets.

Guillaume Launay, Raul Mendez, Shoshana J. Wodak, Thomas Simonson

BMC Bioinform., 2007

Relating destabilizing regions to known functional sites in proteins.

Benoit H. Dessailly, Marc F. Lensink, Shoshana J. Wodak

BMC Bioinform., 2007

2006

GenePro: a cytoscape plug-in for advanced visualization and analysis of interaction networks.

James Vlasblom, Samuel Wu, Shuye Pu, Mark Superina, Gina Liu, Chris Orsi, Shoshana J. Wodak

Bioinform., 2006

2005

CYGD: the Comprehensive Yeast Genome Database.

Ulrich Güldener, Martin Münsterkötter, Gabi Kastenmüller, Normann Strack, Jacques van Helden, Christian Lemer, J. Richelles, Shoshana J. Wodak, J. García-Martínez, José E. Pérez-Ortín, Holger Michael, Andreas Kaps, E. Talla, Bernard Dujon, Bruno André, J. L. Souciet, J. De Montigny, E. Bon, C. Gaillardin, Hans-Werner Mewes

Nucleic Acids Res., 2005

Metabolic PathFinding: inferring relevant pathways in biochemical networks.

Didier Croes, Fabian Couche, Shoshana J. Wodak, Jacques van Helden

Nucleic Acids Res., 2005

2004

ACLAME: A CLAssification of Mobile genetic Elements.

Raphaël Leplae, Aline Hebrant, Shoshana J. Wodak, Ariane Toussaint

Nucleic Acids Res., 2004

The aMAZE LightBench: a web interface to a relational database of cellular processes.

Christian Lemer, Erick Antezana, Fabian Couche, Frédéric Fays, Xavier Santolaria, Rekin's Janky, Yves Deville, Jean Richelle, Shoshana J. Wodak

Nucleic Acids Res., 2004

Combining pattern discovery and discriminant analysis to predict gene co-regulation.

N. Simonis, Shoshana J. Wodak, G. N. Cohen, Jacques van Helden

Bioinform., 2004

2003

An overview of data models for the analysis of biochemical pathways.

Yves Deville, David R. Gilbert, Jacques van Helden, Shoshana J. Wodak

Briefings Bioinform., 2003

2002

Advanced pairwise structure alignments of proteins and analysis of conformational changes.

Maria Elena Ochagavía, Jean Richelle, Shoshana J. Wodak

Bioinform., 2002

2001

From Molecular Activities and Processes to Biological Function.

Jacques van Helden, Avi Naim, Christian Lemer, Renato Mancuso, Matthew D. Eldridge, Shoshana J. Wodak

Briefings Bioinform., 2001

2000

Application of Regulatory Sequence Analysis and Metabolic Network Analysis to the Interpretation of Gene Expression Data.

Jacques van Helden, David R. Gilbert, Lorenz Wernisch, Michael Schroeder, Shoshana J. Wodak

Proceedings of the Computational Biology, 2000

1999

Logical Tools for Quering and Assisting Annotation of a Biochemical Pathway Database.

Jacques van Helden, David R. Gilbert, Lorenz Wernisch, Renato Mancuso, Matthew D. Eldridge, Kirill Degtyarenko, Shoshana J. Wodak

Proceedings of the German Conference on Bioinformatics, 1999

1997

Molecular Systematics in Three Dimensions.

Shoshana J. Wodak

Proceedings of the German Conference on Bioinformatics, 1997