John Reinitz

According to our database1, John Reinitz authored at least 30 papers between 1994 and 2020.

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Bibliography

2020
Fully interpretable deep learning model of transcriptional control.
Bioinform., 2020

2019
An in silico analysis of robust but fragile gene regulation links enhancer length to robustness.
PLoS Comput. Biol., 2019

2016
Parallel simulated annealing using an adaptive resampling interval.
Parallel Comput., 2016

Hybrid Reductions of Computational Models of Ion Channels Coupled to Cellular Biochemistry.
Proceedings of the Computational Methods in Systems Biology, 2016

2014
Punctuated evolution and robustness in morphogenesis.
Biosyst., 2014

2012
Modeling of Gap Gene Expression in <i>Drosophila Kruppel</i> Mutants.
PLoS Comput. Biol., 2012

2011
Mechanisms of gap gene expression canalization in the Drosophila blastoderm.
BMC Syst. Biol., 2011

2009
Canalization of Gene Expression and Domain Shifts in the <i>Drosophila</i> Blastoderm by Dynamical Attractors.
PLoS Comput. Biol., 2009

FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution.
Nucleic Acids Res., 2009

Estimation of errors introduced by confocal imaging into the data on segmentation gene expression in <i>Drosophila</i>.
Bioinform., 2009

Estimation of Errors in Gene Expression Data Introduced by Diffractive Blurring of Confocal Images.
Proceedings of the 13th International Machine Vision and Image Processing Conference, 2009

2007
Master equation simulation analysis of immunostained Bicoid morphogen gradient.
BMC Syst. Biol., 2007

2006
Reverse Engineering the Gap Gene Network of <i>Drosophila melanogaster</i>.
PLoS Comput. Biol., 2006

2005
ImageServer, a Tool for On-line Processing and Analysis of Biological Images.
J. Integr. Bioinform., 2005

2004
A database for management of gene expression data in situ.
Bioinform., 2004

2002
Reconstruction of the Dynamics of Drosophila Genes Expression from Sets of Images Sharing a Common Pattern.
Real Time Imaging, 2002

A method for two-dimensional registration and construction of the two-dimensional atlas of gene expression patterns in situ.
Silico Biol., 2002

Information and simulation systems for the analysis of gene regulation and metabolic pathways (Preface).
Silico Biol., 2002

Support vector regression applied to the determination of the developmental age of a Drosophila embryo from its segmentation gene expression patterns.
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

2001
Registration of the expression patterns of Drosophila segmentation genes by two independent methods.
Bioinform., 2001

Looking at functional genomics from inside the Drosophila blastoderm.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

Application of the Neural Networks Based on Multi-valued Neurons to Classification of the Images of Gene Expression Patterns.
Proceedings of the Computational Intelligence, 2001

Using of Evolutionary Computations in Image Processing for Quantitative Atlas of Drosophila Genes Expression.
Proceedings of the Applications of Evolutionary Computing, 2001

2000
HOX Pro: a specialized database for clusters and networks of homeobox genes.
Nucleic Acids Res., 2000

Fast Redundant Dyadic Wavelet Transform in Application to Spatial Registration of the Expression Patterns of Drosophila Segmentation Genes.
Proceedings of the 15th International Conference on Pattern Recognition, 2000

Design of the Integrated Atlas of Segmentation Gene Expression in Situ.
Proceedings of the German Conference on Bioinformatics (GCB 2000), 2000

Experimental Determination of Drosophila Embryonic Coordinates by Genetic Algorithms, the Simplex method, and Their Hybrid.
Proceedings of the Real-World Applications of Evolutionary Computing, 2000

1999
Spatio-Temporal Registration of the Expression Patterns of Drosophila Segmentation Genes.
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

1995
Modeling the Connection Between Development and Evolution: Preliminary Report.
Proceedings of the Evolution and Biocomputation, Computational Models of Evolution, 1995

1994
Computer-assisted restriction mapping: an integrated approach to handling experimental uncertainty.
Comput. Appl. Biosci., 1994


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