Nikolay A. Kolchanov
Orcid: 0000-0001-6800-8787
According to our database1,
Nikolay A. Kolchanov
authored at least 91 papers
between 1992 and 2024.
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Bibliography
2024
J. Integr. Bioinform., December, 2024
Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection.
J. Integr. Bioinform., December, 2024
2018
J. Bioinform. Comput. Biol., 2018
Introduction to the 9th Young Scientists School on Systems Biology and Bioinformatics (SBB'2017).
J. Bioinform. Comput. Biol., 2018
2017
Editorial - Bioinformatics development at the BGRS\SB conference series: 10th anniversary.
J. Bioinform. Comput. Biol., 2017
Identification of residues of the archaeal RNA-binding Nip7 proteins specific to environmental conditions.
J. Bioinform. Comput. Biol., 2017
2016
BMC Bioinform., 2016
2015
J. Bioinform. Comput. Biol., 2015
ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology.
BMC Syst. Biol., 2015
Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome).
BMC Syst. Biol., 2015
2013
Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets.
J. Bioinform. Comput. Biol., 2013
How Multiple Auxin Responsive Elements May Interact in plant promoters: a Reverse Problem solution.
J. Bioinform. Comput. Biol., 2013
Enhanced Differential Evolution Entirely Parallel Method for Biomedical Applications.
Proceedings of the Parallel Computing Technologies - 12th International Conference, 2013
2012
SitEx: a computer system for analysis of projections of protein functional sites on eukaryotic genes.
Nucleic Acids Res., 2012
ANDVisio: A new tool for graphic visualization and analysis of literature mined associative gene networks in the ANDSystem.
Silico Biol., 2012
2010
Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches.
J. Integr. Bioinform., 2010
BMC Syst. Biol., 2010
2008
Genetic algorithm and optimized weight matrix application for peroxisome proliferator response elements recognition: Prerequisites of accuracy growth for wide genome research.
Intell. Data Anal., 2008
TRRD: Technology for extraction, storage, and use of knowledge about the structural-functional organization of the transcriptional regulatory regions in the eukaryotic genes.
Intell. Data Anal., 2008
2007
Mathematical Model for Suppression of Subgenomic Hepatitis C Virus RNA Replication in Cell Culture.
J. Bioinform. Comput. Biol., 2007
J. Bioinform. Comput. Biol., 2007
Model of the reception of Hedgehog morphogen concentration Gradient: Comparison with an Extended Range of Experimental Data.
J. Bioinform. Comput. Biol., 2007
A Cellular Automaton to Model the Development of Primary Shoot Meristems of Arabidopsis thaliana.
J. Bioinform. Comput. Biol., 2007
Fifth International Conference on Bioinformatics of Genome Regulation and Structure-BGRS'2006.
Silico Biol., 2007
Simulation of Coevolution in Community by Using the "Evolutionary Constructor" Program.
Silico Biol., 2007
Silico Biol., 2007
Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions.
BMC Bioinform., 2007
AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site.
BMC Bioinform., 2007
BMC Bioinform., 2007
Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes.
Briefings Bioinform., 2007
From Published Expression and Phenotype Data to Structured Knowledge: The Arabidopsis Gene Net Supplementary Database and Its Applications.
Proceedings of the Knowledge Processing and Data Analysis - First International Conference, 2007
Analysis of Protein Functional Site Distribution on Gene Structure.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007
2005
ARGO: a web system for the detection of degenerate motifs and large-scale recognition of eukaryotic promoters.
Nucleic Acids Res., 2005
Nucleic Acids Res., 2005
WebProAnalyst: an interactive tool for analysis of quantitative structure-activity relationships in protein families.
Nucleic Acids Res., 2005
2004
PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins.
Nucleic Acids Res., 2004
CRASP: a program for analysis of coordinated substitutions in multiple alignments of protein sequences.
Nucleic Acids Res., 2004
2003
The 3rd International Conference on Bioinformatics of Genome Regulation and Structure (BGRS 2002) - Preface.
Silico Biol., 2003
2002
ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro.
Nucleic Acids Res., 2002
Nucleic Acids Res., 2002
Nucleic Acids Res., 2002
Information and simulation systems for the analysis of gene regulation and metabolic pathways (Preface).
Silico Biol., 2002
Gene Networks Description and Modeling in the GeneNet System.
Proceedings of the Gene Regulations and Metabolism - Postgenomic Computational Approaches, 2002
2001
ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another.
Nucleic Acids Res., 2001
Nucleosome formation potential of eukaryotic DNA: calculation and promoters analysis.
Bioinform., 2001
The 2nd international conference on the Bioinformatics of Genome Regulation and Structure (BGRS-2000), Novosibirsk, August 2000.
Bioinform., 2001
Detection of conserved physico-chemical characteristics of proteins by analyzing clusters of positions with co-ordinated substitutions.
Bioinform., 2001
Program "Gene Discovery" for Pattern Matching in Promoter Sequences.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001
2000
Methods for integration of heterogeneous information resources in molecular biology in the digital library GeneExpress.
Program. Comput. Softw., 2000
SELEX_DB: an activated database on selected randomized DNA/RNA sequences addressed to genomic sequence annotation.
Nucleic Acids Res., 2000
Nucleic Acids Res., 2000
COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation.
Nucleic Acids Res., 2000
1999
Nucleic Acids Res., 1999
Conformational and physicochemical DNA features specific for transcription factor binding sites.
Bioinform., 1999
Bioinform., 1999
Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins.
Bioinform., 1999
Bioinform., 1999
1998
Nucleic Acids Res., 1998
GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome.
Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998
Combinatorial identification of promoters induced upon immune cell activation.
Proceedings of the German Conference on Bioinformatics, 1998
1997
TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation.
Nucleic Acids Res., 1997
J. Comput. Biol., 1997
Identification of the significant conformational features of functional sites in B-DNA.
Proceedings of the German Conference on Bioinformatics, 1997
Lipid Metabolism Transcription Regulatory Regions Database (LM-TRRD).
Proceedings of the German Conference on Bioinformatics, 1997
Detecting direct correlations between positions in multiple alignments of amino acid sequences.
Proceedings of the German Conference on Bioinformatics, 1997
1996
Comput. Appl. Biosci., 1996
Computer Analysis and Recognition of the Transcription Regulatory Elements in Eukaryotic Genomes.
Proceedings of the German Conference on Bioinformatics, 1996
Genetic Algorithm for Selection of Oligonucleotides for Identification by Hybridisation of Genomic DNA Fragments Possessing Gene Potential.
Proceedings of the German Conference on Bioinformatics, 1996
TRRD and COMPEL Databases on Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences.
Proceedings of the Bioinformatics, German Conference on Bioinformatics, Leipzig, 1996
TRRD and COMPEL Databases an Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences.
Proceedings of the German Conference on Bioinformatics, 1996
Comparative Analysis of the Secondary Structure of mRNA Encoded by High- and Low-Expression Eukaryotic Genes.
Proceedings of the German Conference on Bioinformatics, 1996
WWWTRRD: Hypertext Information System an Transcription Regulation.
Proceedings of the German Conference on Bioinformatics, 1996
1995
Comput. Appl. Biosci., 1995
Identification of CDNA Sequences by Specific Oligonucleotide Sets - A Computer Tool and Application.
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995
Data representation in the TRRD-a database of transcription regulatory regions of the eukaryotic genomes.
Proceedings of the 28th Annual Hawaii International Conference on System Sciences (HICSS-28), 1995
1994
Construction of a generalized consensus matrix for recognition of vertebrate pre-mRNA 3'-terminal processing sites.
Comput. Appl. Biosci., 1994
1993
SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites.
Comput. Appl. Biosci., 1993
1992
Fast, statistically based alignment of amino acid sequences on the base of diagonal fragments of DOT-matrices.
Comput. Appl. Biosci., 1992