Ralf Hofestädt

Affiliations:
  • Bielefeld University, Germany


According to our database1, Ralf Hofestädt authored at least 98 papers between 1990 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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In proceedings 
Article 
PhD thesis 
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Links

Online presence:

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Bibliography

2024
BGRS: bioinformatics of genome regulation and data integration.
J. Integr. Bioinform., December, 2024

2021
Special Issue of the 1st International Applied Bioinformatics Conference (iABC'21).
J. Integr. Bioinform., 2021

OverCOVID: an integrative web portal for SARS-CoV-2 bioinformatics resources.
J. Integr. Bioinform., 2021

VANESA: An open-source hybrid functional Petri net modeling and simulation environment in systems biology.
Biosyst., 2021

2020
Bioinformatics of genome regulation and structure - 2020 papers collection.
J. Integr. Bioinform., 2020

2019
Tissue-Specific Subcellular Localization Prediction Using Multi-Label Markov Random Fields.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools.
J. Integr. Bioinform., 2019

Integrative Bioinformatics: History and Future.
J. Integr. Bioinform., 2019

Bioinformatics research at BGRS\SB-2018.
J. Bioinform. Comput. Biol., 2019

Systems biology research at BGRS-2018.
BMC Syst. Biol., 2019

2018
GenCoNet - A Graph Database for the Analysis of Comorbidities by Gene Networks.
J. Integr. Bioinform., 2018

Search for New Candidate Genes Involved in the Comorbidity of Asthma and Hypertension Based on Automatic Analysis of Scientific Literature.
J. Integr. Bioinform., 2018

Integrative Analysis of Co-Morbid Multifactorial Diseases.
J. Integr. Bioinform., 2018

shRNA-Induced Knockdown of a Bioinformatically Predicted Target IL10 Influences Functional Parameters in Spontaneously Hypertensive Rats with Asthma.
J. Integr. Bioinform., 2018

Molecular Relationships between Bronchial Asthma and Hypertension as Comorbid Diseases.
J. Integr. Bioinform., 2018

Heuristic Modeling and 3D Stereoscopic Visualization of a Chlamydomonas reinhardtii Cell.
J. Integr. Bioinform., 2018

OMPetri: A New Petri Net Simulation Environment Based on OpenModelica.
Proceedings of the 10th International Conference on Bioinformatics and Biomedical Technology, 2018

Visualization and Analysis of miRNAs Implicated in Amyotrophic Lateral Sclerosis Within Gene Regulatory Pathways.
Proceedings of the German Medical Data Sciences: A Learning Healthcare System, 2018

2017
Computational miRNomics - Integrative Approaches.
J. Integr. Bioinform., 2017

Visualization and Analysis of MicroRNAs within KEGG Pathways using VANESA.
J. Integr. Bioinform., 2017

Editorial - Bioinformatics development at the BGRS\SB conference series: 10th anniversary.
J. Bioinform. Comput. Biol., 2017

The joint NETTAB/Integrative Bioinformatics 2015 Meeting: aims, topics and outcomes.
BMC Bioinform., 2017

KALIS - An eHealth System for Biomedical Risk Analysis of Drugs.
Proceedings of the Health Informatics Meets eHealth - Digital Insight - Information-Driven Health & Care, 2017

2016
DaTo: an atlas of biological databases and tools.
J. Integr. Bioinform., 2016

KATIS: An eHealth System for Complementary Medicine.
Proceedings of the Health Informatics Meets eHealth - Predictive Modeling in Healthcare - From Prediction to Prevention, 2016

2015
GraphSAW: A web-based system for graphical analysis of drug interactions and side effects using pharmaceutical and molecular data.
BMC Medical Informatics Decis. Mak., 2015

Identifying adverse drug reactions and drug-induced diseases using network-based drug mapping.
J. Bioinform. Comput. Biol., 2015

Introductory note for BGRS\SB-2014 special issue.
J. Bioinform. Comput. Biol., 2015

2014
VANESA - A Software Application for the Visualization and Analysis of Networks in System Biology Applications.
J. Integr. Bioinform., 2014

Open problems in Petri net modeling and simulation of biological systems.
it Inf. Technol., 2014

Integrative Bioinformatics.
Proceedings of the Approaches in Integrative Bioinformatics - Towards the Virtual Cell, 2014

2013
Editorial.
J. Integr. Bioinform., 2013

Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets.
J. Bioinform. Comput. Biol., 2013

Computational Construction of Specialized Biological Networks.
J. Bioinform. Comput. Biol., 2013

2012
A new object-oriented Petri net simulation environment based on modelica.
Proceedings of the Winter Simulation Conference, 2012

KAIS: Ein webbasiertes System zur patientenindividuellen Arzneimittel-Interaktionsprüfung.
Proceedings of the 57. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie, 42. Jahrestagung der Gesellschaft für Informatik, Was bewegt uns in der/die Zukunft?, 2012

2011
Petri net models for the semi-automatic construction of large scale biological networks.
Nat. Comput., 2011

Data Warehouses in Bioinformatics: Integration of Molecular Biological Data.
it Inf. Technol., 2011

MyBioNet: interactively visualize, edit and merge biological networks on the Web.
Bioinform., 2011

Fundamental Features of Metabolic Computing.
Proceedings of the Advances in Soft Computing, 2011

Daten in den Lebenswissenschaften: Datenbanken als Kommunikationszentrum.
Proceedings of the 41. Jahrestagung der Gesellschaft für Informatik, 2011

2010
Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches.
J. Integr. Bioinform., 2010

Prediction of thioredoxin and glutaredoxin target proteins by identifying reversibly oxidized cysteinyl residues.
J. Integr. Bioinform., 2010

CardioVINEdb: a data warehouse approach for integration of life science data in cardiovascular diseases.
J. Integr. Bioinform., 2010

Reconstruction of biological networks based on life science data integration.
J. Integr. Bioinform., 2010

Modeling of Cell-to-Cell Communication Processes with Petri Nets Using the Example of Quorum Sensing.
Silico Biol., 2010

Informationssysteme für die translationale Gesundheitsforschung (Vorwort).
Proceedings of the 40. Jahrestagung der Gesellschaft für Informatik, Service Science - Neue Perspektiven für die Informatik, INFORMATIK 2010, Leipzig, Germany, September 27, 2010

Daten in den Lebenswissenschaften. Vom Papier über Datenbanken zur integrierten Informationsquelle (Vorwort).
Proceedings of the 40. Jahrestagung der Gesellschaft für Informatik, Service Science - Neue Perspektiven für die Informatik, INFORMATIK 2010, Leipzig, Germany, September 27, 2010

DAWIS-M.D. - A Data Warehouse System for Metabolic Data.
Proceedings of the 40. Jahrestagung der Gesellschaft für Informatik, Service Science - Neue Perspektiven für die Informatik, INFORMATIK 2010, Leipzig, Germany, September 27, 2010

PBSK browser: Navigate biological pathways of PSI-MI, BioPAX, SBML and KGML formats.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

2009
Bioinformatik.
Inform. Spektrum, 2009

Daten in den Lebenswissenschaften - Vom Paper über Datenbanken zur integrierten Informationsquelle.
Proceedings of the 39. Jahrestagung der Gesellschaft für Informatik, Im Focus das Leben, INFORMATIK 2009, Lübeck, Germany, September 28, 2009

2008
BioDWH: A Data Warehouse Kit for Life Science Data Integration.
J. Integr. Bioinform., 2008

2007
VINEdb: a data warehouse for integration and interactive exploration of life science data.
J. Integr. Bioinform., 2007

Extended Backus-Systems for the Representation and Specification of the genome.
J. Bioinform. Comput. Biol., 2007

A Medical Case-Based Reasoning Component for the Rare Metabolic Diseases Database Ramedis.
Proceedings of the 20th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2007), 2007

2006
MILAN - A medical information-system linking agents to metabolic networks.
J. Integr. Bioinform., 2006

A medical bioinformatics approach for metabolic disorders: Biomedical data prediction, modeling, and systematic analysis.
J. Biomed. Informatics, 2006

2004
STCDB: Signal Transduction Classification Database.
Nucleic Acids Res., 2004

Molekulare Bioinformatik.
it Inf. Technol., 2004

Preface - Dagstuhl Seminar on Integrative Bioinformatics.
Silico Biol., 2004

An algorithm for linear metabolic pathway alignment.
Silico Biol., 2004

04281 Abstracts Collection - Integrative Bioinformatics - Aspects of the Virtual Cell.
Proceedings of the Integrative Bioinformatics - Aspects of the Virtual Cell, 04.07., 2004

2003
The 3rd International Conference on Bioinformatics of Genome Regulation and Structure (BGRS 2002) - Preface.
Silico Biol., 2003

IIUDB: An object-oriented system for modelling, integration and analysis of gene controlled metabolic networks.
Silico Biol., 2003

Quantitative Petri net model of gene regulated metabolic networks in the cell.
Silico Biol., 2003

2002
Supporting genotype-phenotype correlation with the rare metabolic diseases database Ramedis.
Silico Biol., 2002

Information and simulation systems for the analysis of gene regulation and metabolic pathways (Preface).
Silico Biol., 2002

BioDataServer: A SQL-based service for the online integration of life science data.
Silico Biol., 2002

Information Fusion and Metabolic Network Control.
Proceedings of the Gene Regulations and Metabolism - Postgenomic Computational Approaches, 2002

Case-based Support of Information Retrieval and Analysis of Molecular Data.
Proceedings of the 15th IEEE Symposium on Computer-Based Medical Systems (CBMS 2002), 2002

Studien- und Forschungsführer Bioinformatik.
Spektrum Akadem. Verl., 2002

2001
RAMEDIS - Rare Metabolic Diseases Publishing Tool for Genotype-Phenotype Correlation.
Proceedings of the MEDINFO 2001, 2001

Information System for the Support of Research, Diagnosis and Therapy of Inborn Metabolic Diseases.
Proceedings of the MEDINFO 2001, 2001

2000
Workshop "Molekulare Bioinformatik".
Proceedings of the Informatik 2000, 2000

Logical and Semantic Database Integration.
Proceedings of the 1st IEEE International Symposium on Bioinformatics and Biomedical Engineering, 2000

1999
Metabolic Drug Pointing and Information Processing.
Proceedings of the Medical Informatics Europe '99, Proceedings, Ljubljana, Slovenia, 1999

Predicting transcription factor binding sites by constructing context specific matrices.
Proceedings of the German Conference on Bioinformatics, 1999

MARGBench - An Approach for Integration, Modeling and Animation of Metabolic Networks.
Proceedings of the German Conference on Bioinformatics, 1999

1998
Quantitative modeling of biochemical networks.
Silico Biol., 1998

A Integrative Molecular Information System.
Proceedings of the MEDINFO '98, 1998

Workshop: Molekulare Bioinformatik.
Proceedings of the Informatik '98, 1998

The Metabolic Diseases DataBase (MDDB) - A Molecular Database Toolkit for the Detection of Inborne Errors.
Proceedings of the German Conference on Bioinformatics, 1998

A promoter model based on different combinations of binding sites.
Proceedings of the German Conference on Bioinformatics, 1998

Schema Derivation for WWW Information Sources and Their Integration with Databases in Bioinformatics.
Proceedings of the Advances in Databases and Information Systems, 1998

1996
Simulation of load balancing with cellular automata.
Simul. Pract. Theory, 1996

Editorial: Informatik in den Biowissenschaften.
Informationstechnik Tech. Inform., 1996

Metabolic Pathways and the Detection of Inborn Errors.
Proceedings of the German Conference on Bioinformatics, 1996

1994
Workshop Modellierung der Zelldifferenzierung.
Künstliche Intell., 1994

Ein wissensbasierter Ansatz zur Diagnose genetischer Krankheiten.
Proceedings of the Medizin und Information, 1994

Dynamic Load Balancing Based on the Theory of Cellular Automata.
Proceedings of the Massively Parallel Processing Applications and Develompent, 1994

1993
1. Fachtagung "Informatik in den Biowissenschaften".
Künstliche Intell., 1993

Grammatical Formalization of Metabolic Processes.
Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, 1993

1992
Bioinformatik und Umweltinformatik - neue Aspekte und Aufgaben der Informatik.
Inform. Forsch. Entwickl., 1992

1991
Simulation metabolischer Prozesse auf der Basis einer grammatikalischen Formalisierung.
Proceedings of the 7. Symposium Simulationstechnik: Fortschritte in der Simulationstechnik, 1991

VARY - The First Expert System for Analysis of Genome Variability.
Proceedings of the Medical Informatics Europe 1991, 1991

A Cellular Grammar to Model Metabolic Processes.
Proceedings of the Medical Informatics Europe 1991, 1991

1990
Vom Metabolismus zur genetischen Sprache.
PhD thesis, 1990


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