Ovidiu Radulescu

According to our database, Ovidiu Radulescu authored at least 44 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

A Computational Approach to Polynomial Conservation Laws.

Aurélien Desoeuvres, Alexandru Iosif, Christoph Lüders, Ovidiu Radulescu, Hamid Rahkooy, Matthias Seiß, Thomas Sturm

SIAM J. Appl. Dyn. Syst., March, 2024

Reduction of Chemical Reaction Networks with Approximate Conservation Laws.

Aurélien Desoeuvres, Alexandru Iosif, Christoph Lüders, Ovidiu Radulescu, Hamid Rahkooy, Matthias Seiß, Thomas Sturm

SIAM J. Appl. Dyn. Syst., March, 2024

A skin microbiome model with AMP interactions and analysis of quasi-stability vs stability in population dynamics.

Eléa Thibault Greugny, François Fages, Ovidiu Radulescu, Peter Szmolyan, Georgios N. Stamatas

Theor. Comput. Sci., February, 2024

2022

ODEbase: A Repository of ODE Systems for Systems Biology.

Christoph Lüders, Thomas Sturm, Ovidiu Radulescu

CoRR, 2022

Qualitative Dynamics of Chemical Reaction Networks: An Investigation Using Partial Tropical Equilibrations.

Aurélien Desoeuvres, Peter Szmolyan, Ovidiu Radulescu

Proceedings of the Computational Methods in Systems Biology, 2022

2021

Push-forward method for piecewise deterministic biochemical simulations.

Guilherme C. P. Innocentini, Arran Hodgkinson, Fernando Antoneli, Arnaud Debussche, Ovidiu Radulescu

Theor. Comput. Sci., 2021

Algorithmic Reduction of Biological Networks with Multiple Time Scales.

Niclas Kruff, Christoph Lüders, Ovidiu Radulescu, Thomas Sturm, Sebastian Walcher

Math. Comput. Sci., 2021

LNetReduce: Tool for Reducing Linear Dynamic Networks with Separated Timescales.

Marion Buffard, Aurélien Desoeuvres, Aurélien Naldi, Clément Requilé, Andrei Yu. Zinovyev, Ovidiu Radulescu

Proceedings of the Computational Methods in Systems Biology, 2021

2020

Identifying the parametric occurrence of multiple steady states for some biological networks.

Russell J. Bradford, James H. Davenport, Matthew England, Hassan Errami, Vladimir P. Gerdt, Dima Grigoriev, Charles Tapley Hoyt, Marek Kosta, Ovidiu Radulescu, Thomas Sturm, Andreas Weber

J. Symb. Comput., 2020

Interval Constraint Satisfaction and Optimization for Biological Homeostasis and Multistationarity.

Aurélien Desoeuvres, Gilles Trombettoni, Ovidiu Radulescu

Proceedings of the Computational Methods in Systems Biology, 2020

A Linear Algebra Approach for Detecting Binomiality of Steady State Ideals of Reversible Chemical Reaction Networks.

Hamid Rahkooy, Ovidiu Radulescu, Thomas Sturm

Proceedings of the Computer Algebra in Scientific Computing - 22nd International Workshop, 2020

Tropical Geometry of Biological Systems (Invited Talk).

Ovidiu Radulescu

Proceedings of the Computer Algebra in Scientific Computing - 22nd International Workshop, 2020

2019

Metastable Regimes and Tipping Points of Biochemical Networks with Potential Applications in Precision Medicine.

Satya Swarup Samal, Jeyashree Krishnan, Ali Hadizadeh Esfahani, Christoph Lüders, Andreas Weber, Ovidiu Radulescu

Proceedings of the Automated Reasoning for Systems Biology and Medicine, 2019

An in silico analysis of robust but fragile gene regulation links enhancer length to robustness.

Kenneth Barr, John Reinitz, Ovidiu Radulescu

PLoS Comput. Biol., 2019

Effective Computational Methods for Hybrid Stochastic Gene Networks.

Guilherme C. P. Innocentini, Fernando Antoneli, Arran Hodgkinson, Ovidiu Radulescu

Proceedings of the Computational Methods in Systems Biology, 2019

2018

The SYMBIONT project: symbolic methods for biological networks.

François Boulier, François Fages, Ovidiu Radulescu, Satya Swarup Samal, Andreas Schuppert, Werner M. Seiler, Thomas Sturm, Sebastian Walcher, Andreas Weber

ACM Commun. Comput. Algebra, 2018

2017

Centralized Networks to Generate Human Body Motions.

Sergei Vakulenko, Ovidiu Radulescu, Ivan Morozov, Andreas Weber

Sensors, 2017

Reconstruction and signal propagation analysis of the Syk signaling network in breast cancer cells.

Aurélien Naldi, Romain M. Larive, Urszula Czerwinska, Serge Urbach, Philippe Montcourrier, Christian Roy, Jérôme Solassol, Gilles Freiss, Peter J. Coopman, Ovidiu Radulescu

PLoS Comput. Biol., 2017

Far-From-Equilibrium Time Evolution between Two Gamma Distributions.

Eun-Jin Kim, Lucille-Marie Tenkès, Rainer Hollerbach, Ovidiu Radulescu

Entropy, 2017

Linking metabolic network features to phenotypes using sparse group lasso.

Satya Swarup Samal, Ovidiu Radulescu, Andreas Weber, Holger Fröhlich

Bioinform., 2017

A Case Study on the Parametric Occurrence of Multiple Steady States.

Russell J. Bradford, James H. Davenport, Matthew England, Hassan Errami, Vladimir P. Gerdt, Dima Grigoriev, Charles Tapley Hoyt, Marek Kosta, Ovidiu Radulescu, Thomas Sturm, Andreas Weber

Proceedings of the 2017 ACM on International Symposium on Symbolic and Algebraic Computation, 2017

Symbolic Versus Numerical Computation and Visualization of Parameter Regions for Multistationarity of Biological Networks.

Matthew England, Hassan Errami, Dima Grigoriev, Ovidiu Radulescu, Thomas Sturm, Andreas Weber

Proceedings of the Computer Algebra in Scientific Computing - 19th International Workshop, 2017

2016

Geometric analysis of pathways dynamics: Application to versatility of TGF-β receptors.

Satya Swarup Samal, Aurélien Naldi, Dima Grigoriev, Andreas Weber, Nathalie Théret, Ovidiu Radulescu

Biosyst., 2016

Hybrid Reductions of Computational Models of Ion Channels Coupled to Cellular Biochemistry.

Jasha Sommer-Simpson, John Reinitz, Leonid Fridlyand, Louis Philipson, Ovidiu Radulescu

Proceedings of the Computational Methods in Systems Biology, 2016

2015

Symbolic Dynamics of Biochemical Pathways as Finite States Machines.

Ovidiu Radulescu, Satya Swarup Samal, Aurélien Naldi, Dima Grigoriev, Andreas Weber

Proceedings of the Computational Methods in Systems Biology, 2015

Analysis of Reaction Network Systems Using Tropical Geometry.

Satya Swarup Samal, Dima Grigoriev, Holger Fröhlich, Ovidiu Radulescu

Proceedings of the Computer Algebra in Scientific Computing - 17th International Workshop, 2015

2014

A constraint solving approach to model reduction by tropical equilibration.

Sylvain Soliman, François Fages, Ovidiu Radulescu

Algorithms Mol. Biol., 2014

2013

A hybrid mammalian cell cycle model.

Vincent Noël, Sergey Vakulenko, Ovidiu Radulescu

Proceedings of the Proceedings Second International Workshop on Hybrid Systems and Biology, 2013

Kinetic modelling of phospholipid synthesis in Plasmodium knowlesi unravels crucial steps and relative importance of multiple pathways.

Partho Sen, Henri J. Vial, Ovidiu Radulescu

BMC Syst. Biol., 2013

2012

Flexible and Robust Networks.

Sergei Vakulenko, Ovidiu Radulescu

J. Bioinform. Comput. Biol., 2012

Flexible and Robust Patterning by Centralized Gene Networks.

Sergei Vakulenko, Ovidiu Radulescu

Fundam. Informaticae, 2012

Hybrid models of the cell cycle molecular machinery

Vincent Noel, Dima Grigoriev, Sergei Vakulenko, Ovidiu Radulescu

Proceedings of the Proceedings First International Workshop on Hybrid Systems and Biology, 2012

2011

Genetically Regulated Metabolic Networks: Gale-Nikaido Modules and Differential Inequalities.

Ovidiu Radulescu, Anne Siegel, Elisabeth Pécou, Clément Chatelain, Sandrine Lagarrigue

Trans. Comp. Sys. Biology, 2011

Designing Logical Rules to Model the Response of Biomolecular Networks with Complex Interactions: An Application to Cancer Modeling.

Carito Guziolowski, Sylvain Blachon, Tatiana Baumuratova, Gautier Stoll, Ovidiu Radulescu, Anne Siegel

IEEE ACM Trans. Comput. Biol. Bioinform., 2011

Tropical Geometries and Dynamics of Biochemical Networks Application to Hybrid Cell Cycle Models.

Vincent Noel, Dima Grigoriev, Sergei Vakulenko, Ovidiu Radulescu

Proceedings of the 2nd International Workshop on Static Analysis and Systems Biology, 2011

Algorithm for Identification of Piecewise Smooth Hybrid Systems: Application to Eukaryotic Cell Cycle Regulation.

Vincent Noel, Sergei Vakulenko, Ovidiu Radulescu

Proceedings of the Algorithms in Bioinformatics - 11th International Workshop, 2011

2010

Localizing potentially active post-transcriptional regulations in the Ewing's sarcoma gene regulatory network.

Tatiana Baumuratova, Didier Surdez, Bernard Delyon, Gautier Stoll, Olivier Delattre, Ovidiu Radulescu, Anne Siegel

BMC Syst. Biol., 2010

2009

Canalization of Gene Expression and Domain Shifts in the <i>Drosophila</i> Blastoderm by Dynamical Attractors.

Manu, Svetlana Surkova, Alexander V. Spirov, Vitaly V. Gursky, Hilde Janssens, Ah-Ram Kim, Ovidiu Radulescu, Carlos E. Vanario-Alonso, David H. Sharp, Maria Samsonova, John Reinitz

PLoS Comput. Biol., 2009

Hybrid stochastic simplifications for multiscale gene networks.

Alina Crudu, Arnaud Debussche, Ovidiu Radulescu

BMC Syst. Biol., 2009

Method for Relating Inter-patient Gene Copy Numbers Variations with Gene Expression via Gene Influence Networks.

Sylvain Blachon, Gautier Stoll, Carito Guziolowski, Andrei Yu. Zinovyev, Emmanuel Barillot, Anne Siegel, Ovidiu Radulescu

Proceedings of the Workshops of the 5th IFIP Conference on Artificial Intelligence Applications & Innovations (AIAI-2009), 2009

2008

Robust simplifications of multiscale biochemical networks.

Ovidiu Radulescu, Alexander N. Gorban, Andrei Yu. Zinovyev, Alain Lilienbaum

BMC Syst. Biol., 2008

Inferring the role of transcription factors in regulatory networks.

Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel

BMC Bioinform., 2008

Curating a Large-Scale Regulatory Network by Evaluating Its Consistency with Expression Datasets.

Carito Guziolowski, Jeremy Gruel, Ovidiu Radulescu, Anne Siegel

Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2008

2007

Théorèmes limites pour les processus de Markov à sauts.

Ovidiu Radulescu, Aurélie Muller, Alina Crudu

Tech. Sci. Informatiques, 2007