Shannon K. McWeeney

According to our database, Shannon K. McWeeney authored at least 17 papers between 2002 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Biology-inspired graph neural network encodes reactome and reveals biochemical reactions of disease.

Joshua G. Burkhart, Guanming Wu, Xubo Song, Francesco Raimondi, Shannon K. McWeeney, Melissa H. Wong, Youping Deng

Patterns, July, 2023

2021

Biology and medicine in the landscape of quantum advantages.

Benjamin A. Cordier, Nicolas P. D. Sawaya, Gian Giacomo Guerreschi, Shannon K. McWeeney

CoRR, 2021

2018

Data Science in Biomedical Informatics Education: Critical Problems and Innovative Solutions.

Harry Hochheiser, Javed Mostafa, Nils Gehlenborg, Shannon K. McWeeney, Valerie Florance

Proceedings of the AMIA 2018, 2018

2016

The effect of inhibition of PP1 and TNFα signaling on pathogenesis of SARS coronavirus.

Jason E. McDermott, Hugh D. Mitchell, Lisa E. Gralinski, Amie J. Eisfeld, Laurence Josset, Armand Bankhead III, Gabriele Neumann, Susan C. Tilton, Alexandra Schäfer, Chengjun Li, Shufang Fan, Shannon K. McWeeney, Ralph S. Baric, Michael G. Katze, Katrina M. Waters

BMC Syst. Biol., 2016

HitWalker2: visual analytics for precision medicine and beyond.

Daniel Bottomly, Shannon K. McWeeney, Beth Wilmot

Bioinform., 2016

2015

plethy: management of whole body plethysmography data in R.

Daniel Bottomly, Beth Wilmot, Shannon K. McWeeney

BMC Bioinform., 2015

Data Like This: Ranked Search of Genomic Data Vision Paper.

V. M. Megler, David Maier, Daniel Bottomly, Libbey White, Shannon K. McWeeney, Beth Wilmot

Proceedings of the Second International Workshop on Exploratory Search in Databases and the Web, 2015

2014

oligoMask: A Framework for Assessing and Removing the Effect of Genetic Variants on Microarray Probes.

Daniel Bottomly, Beth Wilmot, Shannon K. McWeeney

R J., 2014

Challenges in Secondary Analysis of High Throughput Screening Data.

Aurora S. Blucher, Shannon K. McWeeney

Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

2013

Protein co-expression network analysis (ProCoNA).

David L. Gibbs, Arie Baratt, Ralph S. Baric, Yoshihiro Kawaoka, Richard D. Smith, Eric S. Orwoll, Michael G. Katze, Shannon K. McWeeney

J. Clin. Bioinform., 2013

HitWalker: variant prioritization for personalized functional cancer genomics.

Daniel Bottomly, Beth Wilmot, Jeffrey W. Tyner, Christopher A. Eide, Marc M. Loriaux, Brian J. Druker, Shannon K. McWeeney

Bioinform., 2013

2012

The GA and the GWAS: Using Genetic Algorithms to Search for Multilocus Associations.

Michael Mooney, Beth Wilmot, Shannon K. McWeeney

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Utilizing RNA-Seq data for <i>de novo</i> coexpression network inference.

Ovidiu D. Iancu, Sunita Kawane, Daniel Bottomly, Robert P. Searles, Robert Hitzemann, Shannon K. McWeeney

Bioinform., 2012

2011

A Simulation Framework to Investigate in vitro Viral Infection Dynamics.

Armand Bankhead III, Emiliano Mancini, Amy C. Sims, Ralph S. Baric, Shannon K. McWeeney, Peter M. A. Sloot

Proceedings of the International Conference on Computational Science, 2011

Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems.

Jason E. McDermott, Harish Shankaran, Amie J. Eisfeld, Sarah E. Belisle, Gabriele Neumann, Chengjun Li, Shannon K. McWeeney, Carol Sabourin, Yoshihiro Kawaoka, Michael G. Katze, Katrina M. Waters

BMC Syst. Biol., 2011

2007

<i>TandTRAQ</i>: an open-source tool for integrated protein identification and quantitation.

Ted Laderas, Cory Bystrom, Debra McMillen, Guang Fan, Shannon K. McWeeney

Bioinform., 2007

2002

PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished).

Amit Bahl, Brian P. Brunk, Ross L. Coppel, Jonathan Crabtree, Sharon J. Diskin, Martin J. Fraunholz, Gregory R. Grant, Dinesh Gupta, Robert L. Huestis, Jessica C. Kissinger, Philip Labo, Li Li, Shannon K. McWeeney, Arthur J. Milgram, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr.

Nucleic Acids Res., 2002