Christian J. Stoeckert Jr.

According to our database1, Christian J. Stoeckert Jr. authored at least 54 papers between 1996 and 2018.

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Bibliography

2018
MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments.
Nucleic Acids Res., 2018

Transforming and Unifying Research with Biomedical Ontologies: The Penn TURBO Project.
Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

Standardization of the Histopathology Cancer Report: An Ontological Approach.
Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

2017
EuPathDB: the eukaryotic pathogen genomics database resource.
Nucleic Acids Res., 2017

2016
OBIB-a novel ontology for biobanking.
J. Biomed. Semant., 2016

Malaria Study Data Integration and Information Retrieval Based on OBO Foundry Ontologies.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

2014
CLO: The cell line ontology.
J. Biomed. Semant., 2014

Ontodog: a web-based ontology community view generation tool.
Bioinform., 2014

2013
EuPathDB: The Eukaryotic Pathogen database.
Nucleic Acids Res., 2013

Stat and interferon genes identified by network analysis differentially regulate primitive and definitive erythropoiesis.
BMC Syst. Biol., 2013

Development of an Application Ontology for Beta Cell Genomics Based On the Ontology for Biomedical Investigations.
Proceedings of the 4th International Conference on Biomedical Ontology, 2013

Diagnostic criteria and clinical guidelines standardization to automate case classification.
Proceedings of the 4th International Conference on Biomedical Ontology, 2013

Alignment of Cultured Cell Modeling Across OBO Foundry Ontologies: Key Outcomes, Insights.
Proceedings of the 4th International Conference on Biomedical Ontology, 2013

2012
FungiDB: an integrated functional genomics database for fungi.
Nucleic Acids Res., 2012

The Ontology for Parasite Lifecycle (OPL): towards a consistent vocabulary of lifecycle stages in parasitic organisms.
J. Biomed. Semant., 2012

Ontodog: A Web-based Ontology Community View Generator.
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Suggestions for Galaxy Workflow Design Using Semantically Annotated Services.
Proceedings of the Formal Ontology in Information Systems, 2012

2011
AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species.
Nucleic Acids Res., 2011

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).
Bioinform., 2011

AnnotCompute: annotation-based exploration and meta-analysis of genomics experiments.
Database J. Biol. Databases Curation, 2011

The strategies WDK: a graphical search interface and web development kit for functional genomics databases.
Database J. Biol. Databases Curation, 2011

Ontology Driven Data Collection for EuPathDB.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Enriching the Ontology for Biomedical Investigations (OBI) to Improve its Suitability for Web Service Annotations.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2010
EuPathDB: a portal to eukaryotic pathogen databases.
Nucleic Acids Res., 2010

TriTrypDB: a functional genomic resource for the Trypanosomatidae.
Nucleic Acids Res., 2010

Modeling biomedical experimental processes with OBI.
J. Biomed. Semant., 2010

Annotare - a tool for annotating high-throughput biomedical investigations and resulting data.
Bioinform., 2010

2009
PlasmoDB: a functional genomic database for malaria parasites.
Nucleic Acids Res., 2009

GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens <i>Giardia lamblia</i> and <i>Trichomonas vaginalis</i>.
Nucleic Acids Res., 2009

Characterization of Unknown Adult Stem Cell Samples by Large Scale Data Integration and Artificial Neural Networks.
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

2008
ToxoDB: an integrated <i>Toxoplasma gondii</i> database resource.
Nucleic Acids Res., 2008

2007
EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes.
Nucleic Acids Res., 2007

ApiDB: integrated resources for the apicomplexan bioinformatics resource center.
Nucleic Acids Res., 2007

Data Integration and Pattern-Finding in Biological Sequence with TESS's Annotation Grammar and Extraction Language (AnGEL).
Proceedings of the Data Integration in the Life Sciences, 4th International Workshop, 2007

2006
OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups.
Nucleic Acids Res., 2006

A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.
BMC Bioinform., 2006

The MGED Ontology: a resource for semantics-based description of microarray experiments.
Bioinform., 2006

2005
A practical false discovery rate approach to identifying patterns of differential expression in microarray data.
Bioinform., 2005

2004
ApiEST-DB: analyzing clustered EST data of the apicomplexan parasites.
Nucleic Acids Res., 2004

RAD and the RAD Study-Annotator: an approach to collection, organization and exchange of all relevant information for high-throughput gene expression studies.
Bioinform., 2004

An object model and database for functional genomics.
Bioinform., 2004

2003
Common Objects: Think Global, Act Local.
OMICS, 2003

PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data.
Nucleic Acids Res., 2003

2002
PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished).
Nucleic Acids Res., 2002

In memory of Vadim Aleksandrovich Ratner.
Silico Biol., 2002

An open letter to the scientific journals.
Bioinform., 2002

2001
K2/Kleisli and GUS: Experiments in integrated access to genomic data sources.
IBM Syst. J., 2001

A relational schema for both array-based and SAGE gene expression experiments.
Bioinform., 2001

2000
In Memory of Chris Overton.
Silico Biol., 2000

Generation of patterns from gene expression data by assigning confidence to differentially expressed genes.
Bioinform., 2000

1999
EpoDB: a prototype database for the analysis of genes expressed during vertebrate erythropoiesis.
Nucleic Acids Res., 1999

1998
EpoDB: a database of genes expressed during vertebrate erythropoiesis.
Nucleic Acids Res., 1998

1996
EpoDB: An Erythropoiesis Gene Expression Database/Knowledge Base.
Proceedings of the German Conference on Bioinformatics, 1996

EpoDB: An Erythropoiesis Gene Expression Database in Progress.
Proceedings of the Bioinformatics, German Conference on Bioinformatics, Leipzig, 1996


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