Joaquín Tárraga

According to our database, Joaquín Tárraga authored at least 25 papers between 2006 and 2018.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2018

A framework for genomic sequencing on clusters of multicore and manycore processors.

Héctor Martínez, Sergio Barrachina, Maribel Castillo, Joaquín Tárraga, Ignacio Medina, Joaquín Dopazo, Enrique S. Quintana-Ortí

Int. J. High Perform. Comput. Appl., 2018

2017

HGVA: the Human Genome Variation Archive.

Javier López, Jacobo Coll, Matthias Haimel, Swaathi Kandasamy, Joaquín Tárraga, Pedro Furió-Tarí, Wasim Bari, Marta Bleda, Antonio Rueda, Stefan Gräf, Augusto Rendon, Joaquín Dopazo, Ignacio Medina

Nucleic Acids Res., 2017

A new parallel pipeline for DNA methylation analysis of long reads datasets.

Ricardo Olanda, Mariano Pérez, Juan M. Orduña, Joaquín Tárraga, Joaquín Dopazo

BMC Bioinform., 2017

VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy.

José M. Juanes, Asunción Gallego, Joaquín Tárraga, Felipe J. Chaves, Pablo Marín-García, Ignacio Medina, Vicente Arnau, Joaquín Dopazo

BMC Bioinform., 2017

2016

HPG pore: an efficient and scalable framework for nanopore sequencing data.

Joaquín Tárraga, Asunción Gallego, Vicente Arnau, Ignacio Medina, Joaquín Dopazo

BMC Bioinform., 2016

2015

Concurrent and Accurate Short Read Mapping on Multicore Processors.

Héctor Martínez, Joaquín Tárraga, Ignacio Medina, Sergio Barrachina, Maribel Castillo, Joaquín Dopazo, Enrique S. Quintana-Ortí

IEEE ACM Trans. Comput. Biol. Bioinform., 2015

Babelomics 5.0: functional interpretation for new generations of genomic data.

Roberto Alonso, Francisco Salavert, Francisco García-García, José Carbonell-Caballero, Marta Bleda, Luz Garcia-Alonso, Alba Sanchis-Juan, Daniel Perez-Gil, Pablo Marín-García, Rubén Sánchez, Cankut Çubuk, Marta R. Hidalgo, Alicia Amadoz, Rosa D. Hernansaiz-Ballesteros, Alejandro Alemán, Joaquín Tárraga, David Montaner, Ignacio Medina, Joaquín Dopazo

Nucleic Acids Res., 2015

A parallel and sensitive software tool for methylation analysis on multicore platforms.

Joaquín Tárraga, Mariano Pérez, Juan M. Orduña, José Duato, Ignacio Medina, Joaquín Dopazo

Bioinform., 2015

Scalable RNA Sequencing on Clusters of Multicore Processors.

Héctor Martínez, Sergio Barrachina, Maribel Castillo, Joaquín Tárraga, Ignacio Medina, Joaquín Dopazo, Enrique S. Quintana-Ortí

Proceedings of the 2015 IEEE TrustCom/BigDataSE/ISPA, 2015

2014

Acceleration of short and long DNA read mapping without loss of accuracy using suffix array.

Joaquín Tárraga, Vicente Arnau, Héctor Martínez, Raul Moreno, Diego Cazorla, José Salavert Torres, Ignacio Blanquer Espert, Joaquín Dopazo, Ignacio Medina

Bioinform., 2014

2013

Concurrent and Accurate RNA Sequencing on Multicore Platforms

Héctor Martínez, Joaquín Tárraga, Ignacio Medina, Sergio Barrachina, Maribel Castillo, Joaquín Dopazo, Enrique S. Quintana-Ortí

CoRR, 2013

A dynamic pipeline for RNA sequencing on multicore processors.

Héctor Martínez, Joaquín Tárraga, Ignacio Medina, Sergio Barrachina, Maribel Castillo, Joaquín Dopazo, Enrique S. Quintana-Ortí

Proceedings of the 20th European MPI Users's Group Meeting, 2013

2012

Using GPUs for the Exact Alignment of Short-Read Genetic Sequences by Means of the Burrows-Wheeler Transform.

José Salavert Torres, Ignacio Blanquer Espert, Andrés Tomás Dominguez, Vicente Hernández, Ignacio Medina, Joaquín Tárraga, Joaquín Dopazo

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources.

Marta Bleda, Joaquín Tárraga, Alejandro de María, Francisco Salavert, Luz Garcia-Alonso, Matilde Celma, Ainoha Martín, Joaquín Dopazo, Ignacio Medina

Nucleic Acids Res., 2012

2011

Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing.

Rubén Sánchez, François Serra, Joaquín Tárraga, Ignacio Medina, José Carbonell, Luis Pulido, Alejandro de María, Salvador Capella-Gutiérrez, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo

Nucleic Acids Res., 2011

2010

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling.

Ignacio Medina, José Carbonell, Luis Pulido, Sara C. Madeira, Stefan Götz, Ana Conesa, Joaquín Tárraga, Alberto D. Pascual-Montano, Rubén Nogales-Cadenas, Javier Santoyo, Francisco García-García, Martina Marbà, David Montaner, Joaquín Dopazo

Nucleic Acids Res., 2010

2009

Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies.

Ignacio Medina, David Montaner, Nuria Bonifaci, Miguel Angel Pujana, José Carbonell, Joaquín Tárraga, Fátima Al-Shahrour, Joaquín Dopazo

Nucleic Acids Res., 2009

2008

GEPAS, a web-based tool for microarray data analysis and interpretation.

Joaquín Tárraga, Ignacio Medina, José Carbonell, Jaime Huerta-Cepas, Pablo Minguez, Eva Alloza, Fátima Al-Shahrour, Susana Vegas-Azcárate, Stefan Götz, Pablo Escobar, Francisco García-García, Ana Conesa, David Montaner, Joaquín Dopazo

Nucleic Acids Res., 2008

Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments.

Fátima Al-Shahrour, José Carbonell, Pablo Minguez, Stefan Götz, Ana Conesa, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo

Nucleic Acids Res., 2008

2007

Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics.

Joaquín Tárraga, Ignacio Medina, Leonardo Arbiza, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo

Nucleic Acids Res., 2007

ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling.

Lucía Conde, David Montaner, Jordi Burguet-Castell, Joaquín Tárraga, Ignacio Medina, Fátima Al-Shahrour, Joaquín Dopazo

Nucleic Acids Res., 2007

FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments.

Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo

Nucleic Acids Res., 2007

Prophet, a web-based tool for class prediction using microarray data.

Ignacio Medina, David Montaner, Joaquín Tárraga, Joaquín Dopazo

Bioinform., 2007

2006

Next station in microarray data analysis: GEPAS.

David Montaner, Joaquín Tárraga, Jaime Huerta-Cepas, Jordi Burguet-Castell, Juan M. Vaquerizas, Lucía Conde, Pablo Minguez, Javier Vera, Sach Mukherjee, Joan Valls, Miguel A. G. Pujana, Eva Alloza, Javier Herrero, Fátima Al-Shahrour, Joaquín Dopazo

Nucleic Acids Res., 2006

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.

Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, David Montaner, Eva Alloza, Juan M. Vaquerizas, Lucía Conde, Christian Blaschke, Javier Vera, Joaquín Dopazo

Nucleic Acids Res., 2006