Fátima Al-Shahrour

According to our database, Fátima Al-Shahrour authored at least 32 papers between 2003 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

PanDrugs2: prioritizing cancer therapies using integrated individual multi-omics data.

María José Jiménez-Santos, Alba Nogueira-Rodríguez, Elena Piñeiro-Yáñez, Hugo López-Fernández, Santiago García-Martín, Paula Gómez-Plana, Miguel Reboiro-Jato, Gonzalo Gómez-López, Daniel Glez-Peña, Fátima Al-Shahrour

Nucleic Acids Res., July, 2023

2022

bollito: a flexible pipeline for comprehensive single-cell RNA-seq analyses.

Luis García-Jimeno, Coral Fustero Torre, María José Jiménez-Santos, Gonzalo Gómez-López, Tomás Di Domenico, Fátima Al-Shahrour

Bioinform., 2022

2021

CSVS, a crowdsourcing database of the Spanish population genetic variability.

María Peña-Chilet, Gema Roldán, Javier Perez-Florido, Francisco M. Ortuño, Rosario Carmona, Virginia Aquino, Daniel López-López, Carlos Loucera, Jose Luis Fernandez-Rueda, Asunción Gallego, Francisco García-García, Anna González-Neira, Guillermo Pita, Rocío Núñez-Torres, Javier Santoyo-Lopez, Carmen Ayuso, Pablo Minguez, Almudena Avila-Fernandez, Marta Corton, Miguel Ángel Moreno-Pelayo, Matías Morin, Alvaro Gallego-Martinez, Jose A. Lopez-Escamez, Salud Borrego, Guillermo Antiñolo, Jorge Amigo, Josefa Salgado-Garrido, Sara Pasalodos-Sanchez, Beatriz Morte, Fátima Al-Shahrour, Rafael Artuch, Javier Benitez, Luis Antonio Castaño, Ignacio Del Castillo, Aitor Delmiro, Carmina Espinos, Roser González, Daniel Grinberg, Encarnación Guillén, Pablo Lapunzina, Esther López, Ramon Martí, Montserrat Milá, Jose M. Millán, Virginia Nunes, Francesc Palau, Belen Perez, Luis A. Pérez-Jurado, Rosario Perona, Aurora Pujol, Feliciano Ramos, Antonia Ribes, Jordi Rosell, Eulalia Rovira, Jordi Surrallés, Isabel Tejada, Magdalena Ugarte, Ángel Carracedo, Ángel Alonso, Joaquín Dopazo

Nucleic Acids Res., 2021

A comprehensive database for integrated analysis of omics data in autoimmune diseases.

Jordi Martorell-Marugan, Raúl López-Domínguez, Adrián García-Moreno, Daniel Toro-Domínguez, Juan Antonio Villatoro-García, Guillermo Barturen, Adoración Martín-Gómez, Kevin Troulé, Gonzalo Gómez-López, Fátima Al-Shahrour, Víctor González-Rumayor, María Peña-Chilet, Joaquín Dopazo, Julio Sáez-Rodríguez, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez

BMC Bioinform., 2021

DREIMT: a drug repositioning database and prioritization tool for immunomodulation.

Kevin Troulé, Hugo López-Fernández, Santiago García-Martín, Miguel Reboiro-Jato, Carlos Carretero-Puche, Jordi Martorell-Marugan, Guillermo Martín-Serrano, Pedro Carmona-Saez, Daniel Glez-Peña, Fátima Al-Shahrour, Gonzalo Gómez-López

Bioinform., 2021

2019

vulcanSpot: a tool to prioritize therapeutic vulnerabilities in cancer.

Javier Perales-Patón, Tomás Di Domenico, Coral Fustero Torre, Elena Piñeiro-Yáñez, Carlos Carretero-Puche, Héctor Tejero, Alfonso Valencia, Gonzalo Gómez-López, Fátima Al-Shahrour

Bioinform., 2019

Precision medicine needs pioneering clinical bioinformaticians.

Gonzalo Gómez-López, Joaquín Dopazo, Juan C. Cigudosa, Alfonso Valencia, Fátima Al-Shahrour

Briefings Bioinform., 2019

Proposal of a New Bioinformatics Pipeline for Metataxonomics in Precision Medicine.

Osvaldo Graña-Castro, Hugo López-Fernández, Florentino Fdez-Riverola, Fátima Al-Shahrour, Daniel Glez-Peña

Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2019

2010

Selection upon Genome Architecture: Conservation of Functional Neighborhoods with Changing Genes.

Fátima Al-Shahrour, Pablo Minguez, Tomàs Marquès-Bonet, Elodie Gazave, Arcadi Navarro, Joaquín Dopazo

PLoS Comput. Biol., 2010

2009

SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks.

Pablo Minguez, Stefan Götz, David Montaner, Fátima Al-Shahrour, Joaquín Dopazo

Nucleic Acids Res., 2009

Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies.

Ignacio Medina, David Montaner, Nuria Bonifaci, Miguel Angel Pujana, José Carbonell, Joaquín Tárraga, Fátima Al-Shahrour, Joaquín Dopazo

Nucleic Acids Res., 2009

Ultrasome: efficient aberration caller for copy number studies of ultra-high resolution.

Björn Nilsson, Mikael Johansson, Fátima Al-Shahrour, Anne E. Carpenter, Benjamin L. Ebert

Bioinform., 2009

2008

GEPAS, a web-based tool for microarray data analysis and interpretation.

Joaquín Tárraga, Ignacio Medina, José Carbonell, Jaime Huerta-Cepas, Pablo Minguez, Eva Alloza, Fátima Al-Shahrour, Susana Vegas-Azcárate, Stefan Götz, Pablo Escobar, Francisco García-García, Ana Conesa, David Montaner, Joaquín Dopazo

Nucleic Acids Res., 2008

Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments.

Fátima Al-Shahrour, José Carbonell, Pablo Minguez, Stefan Götz, Ana Conesa, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo

Nucleic Acids Res., 2008

2007

DBAli tools: mining the protein structure space.

Marc A. Martí-Renom, Ursula Pieper, Mallur S. Madhusudhan, Andrea Rossi, Narayanan Eswar, Fred P. Davis, Fátima Al-Shahrour, Joaquín Dopazo, Andrej Sali

Nucleic Acids Res., 2007

ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling.

Lucía Conde, David Montaner, Jordi Burguet-Castell, Joaquín Tárraga, Ignacio Medina, Fátima Al-Shahrour, Joaquín Dopazo

Nucleic Acids Res., 2007

FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments.

Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo

Nucleic Acids Res., 2007

The AnnoLite and AnnoLyze programs for comparative annotation of protein structures.

Marc A. Martí-Renom, Andrea Rossi, Fátima Al-Shahrour, Fred P. Davis, Ursula Pieper, Joaquín Dopazo, Andrej Sali

BMC Bioinform., 2007

From genes to functional classes in the study of biological systems.

Fátima Al-Shahrour, Leonardo Arbiza, Hernán Dopazo, Jaime Huerta-Cepas, Pablo Minguez, David Montaner, Joaquín Dopazo

BMC Bioinform., 2007

Functional profiling of microarray experiments using text-mining derived bioentities.

Pablo Minguez, Fátima Al-Shahrour, David Montaner, Joaquín Dopazo

Bioinform., 2007

2006

Next station in microarray data analysis: GEPAS.

David Montaner, Joaquín Tárraga, Jaime Huerta-Cepas, Jordi Burguet-Castell, Juan M. Vaquerizas, Lucía Conde, Pablo Minguez, Javier Vera, Sach Mukherjee, Joan Valls, Miguel A. G. Pujana, Eva Alloza, Javier Herrero, Fátima Al-Shahrour, Joaquín Dopazo

Nucleic Acids Res., 2006

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.

Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, David Montaner, Eva Alloza, Juan M. Vaquerizas, Lucía Conde, Christian Blaschke, Javier Vera, Joaquín Dopazo

Nucleic Acids Res., 2006

2005

GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data.

Juan M. Vaquerizas, Lucía Conde, Patricio Yankilevich, Amaya Cabezón, Pablo Minguez, Ramón Díaz-Uriarte, Fátima Al-Shahrour, Javier Herrero, Joaquín Dopazo

Nucleic Acids Res., 2005

BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments.

Fátima Al-Shahrour, Pablo Minguez, Juan M. Vaquerizas, Lucía Conde, Joaquín Dopazo

Nucleic Acids Res., 2005

Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information.

Fátima Al-Shahrour, Ramón Díaz-Uriarte, Joaquín Dopazo

Bioinform., 2005

Ontologies and Functional Genomics.

Fátima Al-Shahrour, Joaquín Dopazo

Proceedings of the Data Analysis and Visualization in Genomics and Proteomics, 2005

2004

New challenges in gene expression data analysis and the extended GEPAS.

Javier Herrero, Juan M. Vaquerizas, Fátima Al-Shahrour, Lucía Conde, Álvaro Mateos, Javier Santoyo, Ramón Díaz-Uriarte, Joaquín Dopazo

Nucleic Acids Res., 2004

PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level.

Lucía Conde, Juan M. Vaquerizas, Javier Santoyo, Fátima Al-Shahrour, Sergio Ruiz-Llorente, Mercedes Robledo, Joaquín Dopazo

Nucleic Acids Res., 2004

FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes.

Fátima Al-Shahrour, Ramón Díaz-Uriarte, Joaquín Dopazo

Bioinform., 2004

Finding SNPs with Putative Phenotypic Effect at Transcriptional Level.

Lucía Conde, Juan M. Vaquerizas, Javier Santoyo, Fátima Al-Shahrour, Joaquín Dopazo

Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, 2004

2003

GEPAS: a web-based resource for microarray gene expression data analysis.

Javier Herrero, Fátima Al-Shahrour, Ramón Díaz-Uriarte, Álvaro Mateos, Juan M. Vaquerizas, Javier Santoyo, Joaquín Dopazo

Nucleic Acids Res., 2003

Using gene ontology on genome-scale studies to find significant associations of biologically relevant terms to groups of genes.

Fátima Al-Shahrour, Javier Herrero, Álvaro Mateos, Javier Santoyo, Ramón Díaz-Uriarte, Joaquín Dopazo

Proceedings of the NNSP 2003, 2003