Jun Kong
Orcid: 0000-0001-8757-8339Affiliations:
- Georgia State University, Atlanta, GA, USA
According to our database1,
Jun Kong
authored at least 102 papers
between 2006 and 2025.
Collaborative distances:
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Bibliography
2025
A hierarchical data partitioning strategy for irregular applications: a case study in digital pathology.
Clust. Comput., February, 2025
IMI-GPU: Inverted multi-index for billion-scale approximate nearest neighbor search with GPUs.
J. Parallel Distributed Comput., 2025
2024
GeoInformatica, July, 2024
NACNet: A histology context-aware transformer graph convolution network for predicting treatment response to neoadjuvant chemotherapy in Triple Negative Breast Cancer.
Comput. Medical Imaging Graph., 2024
Integrative Graph-Transformer Framework for Histopathology Whole Slide Image Representation and Classification.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024
2023
Self-supervised semantic segmentation of retinal pigment epithelium cells in flatmount fluorescent microscopy images.
Bioinform., April, 2023
Effective and efficient active learning for deep learning-based tissue image analysis.
Bioinform., April, 2023
2022
ACM Trans. Spatial Algorithms Syst., June, 2022
Efficient microscopy image analysis on CPU-GPU systems with cost-aware irregular data partitioning.
J. Parallel Distributed Comput., 2022
Artificial intelligence based liver portal tract region identification and quantification with transplant biopsy whole-slide images.
Comput. Biol. Medicine, 2022
MultiHeadGAN: A deep learning method for low contrast retinal pigment epithelium cell segmentation with fluorescent flatmount microscopy images.
Comput. Biol. Medicine, 2022
Virtual liver needle biopsy from reconstructed three-dimensional histopathological images: Quantification of sampling error.
Comput. Biol. Medicine, 2022
A spatial attention guided deep learning system for prediction of pathological complete response using breast cancer histopathology images.
Bioinform., 2022
Proceedings of the 10th ACM SIGSPATIAL International Workshop on Analytics for Big Geospatial Data, 2022
Proceedings of the 30th International Conference on Advances in Geographic Information Systems, 2022
3DPro: Querying Complex Three-Dimensional Data with Progressive Compression and Refinement.
Proceedings of the 25th International Conference on Extending Database Technology, 2022
2021
Comput. Methods Programs Biomed., 2021
Foveal blur-boosted segmentation of nuclei in histopathology images with shape prior knowledge and probability map constraints.
Bioinform., 2021
Spatial Attention-Based Deep Learning System for Breast Cancer Pathological Complete Response Prediction with Serial Histopathology Images in Multiple Stains.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021
IDEAL: a Vector-Raster Hybrid Model for Efficient Spatial Queries over Complex Polygons.
Proceedings of the 22nd IEEE International Conference on Mobile Data Management, 2021
Histopathology Image Registration By Integrated Texture And Spatial Proximity Based Landmark Selection And Modification.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021
Image Registration with Optimal Regularization Parameter Selection by Learned Auto Encoder Features.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021
Proceedings of the 37th IEEE International Conference on Data Engineering, 2021
Proceedings of the SIGSPATIAL '21: 29th International Conference on Advances in Geographic Information Systems, 2021
2020
PLoS Comput. Biol., 2020
Accelerating Spatial Cross-Matching on CPU-GPU Hybrid Platform With CUDA and OpenACC.
Frontiers Big Data, 2020
Optimizing parameter sensitivity analysis of large-scale microscopy image analysis workflows with multilevel computation reuse.
Concurr. Comput. Pract. Exp., 2020
Prediction of Pathological Complete Response to Neoadjuvant Chemotherapy in Breast Cancer Using Deep Learning with Integrative Imaging, Molecular and Demographic Data.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020
Automatic Brain Organ Segmentation with 3D Fully Convolutional Neural Network for Radiation Therapy Treatment Planning.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020
2019
J. Digit. Imaging, 2019
MaReIA: a cloud MapReduce based high performance whole slide image analysis framework.
Distributed Parallel Databases, 2019
Distributed Parallel Databases, 2019
Sensitivity analysis in digital pathology: Handling large number of parameters with compute expensive workflows.
Comput. Biol. Medicine, 2019
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019
Proceedings of the AMIA 2019, 2019
2018
iSPEED: a Scalable and Distributed In-Memory Based Spatial Query System for Large and Structurally Complex 3D Data.
Proc. VLDB Endow., 2018
CoRR, 2018
Clumped Nuclei Segmentation with Adjacent Point Match and Local Shape based Intensity Analysis for Overlapped Nuclei in Fluorescence In-Situ Hybridization Images.
CoRR, 2018
Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with Intel® Xeon Phi™.
Concurr. Comput. Pract. Exp., 2018
Segmentation of Overlapped Steatosis in Whole-Slide Liver Histopathology Microscopy Images.
Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018
Analysis of Cellular Feature Differences of Astrocytomas with Distinct Mutational Profiles Using Digitized Histopathology Images.
Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018
Clumped Nuclei Segmentation with Adjacent Point Match and Local Shape-Based Intensity Analysis in Fluorescence Microscopy Images.
Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018
2017
Application performance analysis and efficient execution on systems with multi-core CPUs, GPUs and MICs: a case study with microscopy image analysis.
Int. J. High Perform. Comput. Appl., 2017
Automated level set segmentation of histopathologic cells with sparse shape prior support and dynamic occlusion constraint.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017
iSPEED: an Efficient In-Memory Based Spatial Query System for Large-Scale 3D Data with Complex Structures.
Proceedings of the 25th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, 2017
Parallel and Efficient Sensitivity Analysis of Microscopy Image Segmentation Workflows in Hybrid Systems.
Proceedings of the 2017 IEEE International Conference on Cluster Computing, 2017
2016
A framework for 3D vessel analysis using whole slide images of liver tissue sections.
Int. J. Comput. Biol. Drug Des., 2016
Efficient Methods and Parallel Execution for Algorithm Sensitivity Analysis with Parameter Tuning on Microscopy Imaging Datasets.
CoRR, 2016
Proceedings of the Data Management and Analytics for Medicine and Healthcare, 2016
Proceedings of the Data Management and Analytics for Medicine and Healthcare, 2016
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016
Proceedings of the 24th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, GIS 2016, Burlingame, California, USA, October 31, 2016
Three-Dimension (3D) Blood Vessel Reconstruction and Spatial Analytics with Whole-Slide Histological Images.
Proceedings of the AMIA 2016, 2016
2015
Performance Analysis and Efficient Execution on Systems with multi-core CPUs, GPUs and MICs.
CoRR, 2015
Proceedings of the Biomedical Data Management and Graph Online Querying, 2015
Proceedings of the 27th International Symposium on Computer Architecture and High Performance Computing, 2015
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference Munich, Germany, October 5, 2015
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015
Proceedings of the 2015 IEEE International Conference on Big Data (IEEE BigData 2015), Santa Clara, CA, USA, October 29, 2015
2014
Region templates: Data representation and management for high-throughput image analysis.
Parallel Comput., 2014
CoRR, 2014
Comparative Performance Analysis of Intel (R) Xeon Phi (TM), GPU, and CPU: A Case Study from Microscopy Image Analysis.
Proceedings of the 2014 IEEE 28th International Parallel and Distributed Processing Symposium, 2014
2013
Parallel Comput., 2013
Feature-based analysis of large-scale spatio-temporal sensor data on hybrid architectures.
Int. J. High Perform. Comput. Appl., 2013
High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms.
Proceedings of the 27th IEEE International Symposium on Parallel and Distributed Processing, 2013
High-performance computational analysis of glioblastoma pathology images with database support identifies molecular and survival correlates.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
2012
Integrated morphologic analysis for the identification and characterization of disease subtypes.
J. Am. Medical Informatics Assoc., 2012
High-throughput Execution of Hierarchical Analysis Pipelines on Hybrid Cluster Platforms
CoRR, 2012
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium, 2012
High Performance Computing for Integrative Analysis of Large Pathology Image Datasets.
Proceedings of the AMIA 2012, 2012
2011
Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes.
IEEE Trans. Biomed. Eng., 2011
Proceedings of the Medical Imaging 2011: Image Processing, 2011
A comprehensive framework for classification of nuclei in digital microscopy imaging: An application to diffuse gliomas.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011
In silico analysis of nuclei in glioblastoma using large-scale microscopy images improves prediction of treatment response.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011
Towards building computerized image analysis framework for nucleus discrimination in microscopy images of diffuse glioma.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011
Computer-Based Image Analysis of Liver Steatosis with Large-Scale Microscopy Imagery and Correlation with Magnetic Resonance Imaging Lipid Analysis.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011
2010
IEEE Trans. Biomed. Eng., 2010
Proceedings of the Applied Parallel and Scientific Computing, 2010
Texture based image recognition in microscopy images of diffuse gliomas with multi-class gentle boosting mechanism.
Proceedings of the IEEE International Conference on Acoustics, 2010
Proceedings of the Data Integration in the Life Sciences, 7th International Conference, 2010
2009
Histopathological Image Analysis Using Model-Based Intermediate Representations and Color Texture: Follicular Lymphoma Grading.
J. Signal Process. Syst., 2009
Computer-aided prognosis of neuroblastoma on whole-slide images: Classification of stromal development.
Pattern Recognit., 2009
Computer-aided evaluation of neuroblastoma on whole-slide histology images: Classifying grade of neuroblastic differentiation.
Pattern Recognit., 2009
Feature-based registration of histopathology images with different stains: An application for computerized follicular lymphoma prognosis.
Comput. Methods Programs Biomed., 2009
2008
Computer-aided prognosis of neuroblastoma: classification of stromal development on whole-slide images.
Proceedings of the Medical Imaging 2008: Computer-Aided Diagnosis, San Diego, 2008
Proceedings of the Medical Imaging 2008: Computer-Aided Diagnosis, San Diego, 2008
A multi-resolution image analysis system for computer-assisted grading of neuroblastoma differentiation.
Proceedings of the Medical Imaging 2008: Computer-Aided Diagnosis, San Diego, 2008
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008
Texture classification using nonlinear color quantization: Application to histopathological image analysis.
Proceedings of the IEEE International Conference on Acoustics, 2008
2007
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007
Computer-Aided Grading of Neuroblastic Differentiation: Multi-Resolution and Multi-Classifier Approach.
Proceedings of the International Conference on Image Processing, 2007
Proceedings of the 2007 IEEE International Conference on Cluster Computing, 2007
Efficient processing of pathological images using the grid: computer-aided prognosis of neuroblastoma.
Proceedings of the 5th IEEE workshop on Challenges of large applications in distributed environments, 2007
Proceedings of the AMIA 2007, 2007
2006
Service-Based Access to and Processing of Large Scientific Datasets.
Proceedings of the High Performance Computing and Grids in Action, 2006