Kevin Molloy

According to our database, Kevin Molloy authored at least 26 papers between 2010 and 2022.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of four.

2022

MoMA-LoopSampler: a web server to exhaustively sample protein loop conformations.

Amélie Barozet, Kevin Molloy, Marc Vaisset, Christophe Zanon, Pierre Fauret, Thierry Siméon, Juan Cortés

Bioinform., 2022

2020

A reinforcement-learning-based approach to enhance exhaustive protein loop sampling.

Amélie Barozet, Kevin Molloy, Marc Vaisset, Thierry Siméon, Juan Cortés

Bioinform., 2020

POST: A Machine Learning Based Paper Organization and Scheduling Tool.

Nathan Moore, Kevin Molloy, William Lovo, Sven Mayer, Pawel W. Wozniak, Michael Stewart

Proceedings of the Companion of the 2020 ACM International Conference on Supporting Group Work, 2020

2019

Simultaneous system design and path planning: A sampling-based algorithm.

Kevin Molloy, Laurent Denarie, Marc Vaisset, Thierry Siméon, Juan Cortés

Int. J. Robotics Res., 2019

ROMEO: A Plug-and-play Software Platform of Robotics-inspired Algorithms for Modeling Biomolecular Structures and Motions.

Kevin Molloy, Erion Plaku, Amarda Shehu

CoRR, 2019

Employing Deep Learning to Study Biomolecules.

Daniel Veltri, Kevin Molloy

Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018

Hybrid parallelization of a multi-tree path search algorithm: Application to highly-flexible biomolecules.

Alejandro Estaña, Kevin Molloy, Marc Vaisset, Nathalie Sibille, Thierry Siméon, Pau Bernadó, Juan Cortés

Parallel Comput., 2018

Modeling Macromolecular Structures and Motions: Computational Methods for Sampling and Analysis of Energy Landscapes.

Kevin Molloy, Nasrin Akhter, Amarda Shehu

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

ACM-BCB 2018 Computational Structural Bioinformatics Workshop (CSBW) Chairs' Welcome.

Filip Jagodzinski, Brian Y. Chen, Kevin Molloy

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017

ACM-BCB '17 Tutorial: Robotics-inspired Algorithms for Modeling Protein Structures and Motions.

Kevin Molloy, David Morris, Amarda Shehu

Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

The 2017 Computational Structural Bioinformatics Workshop: CSBW 2017.

Nurit Haspel, Amarda Shehu, Kevin Molloy

Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016

A stochastic roadmap method to model protein structural transitions.

Kevin Molloy, Rudy Clausen, Amarda Shehu

Robotica, 2016

Combining System Design and Path Planning.

Laurent Denarie, Kevin Molloy, Marc Vaisset, Thierry Siméon, Juan Cortés

Proceedings of the Algorithmic Foundations of Robotics XII, 2016

2015

Interleaving Global and Local Search for Protein Motion Computation.

Kevin Molloy, Amarda Shehu

Proceedings of the Bioinformatics Research and Applications - 11th International Symposium, 2015

2014

Exploring representations of protein structure for automated remote homology detection and mapping of protein structure space.

Kevin Molloy, M. Jennifer Van, Daniel Barbará, Amarda Shehu

BMC Bioinform., 2014

2013

Probabilistic Search and Energy Guidance for Biased Decoy Sampling in Ab Initio Protein Structure Prediction.

Kevin Molloy, Sameh N. Saleh, Amarda Shehu

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

Higher-order representations of protein structure space.

Kevin Molloy, M. Jennifer Van, Daniel Barbará, Amarda Shehu

Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

2012

Guiding Probabilistic Search of the protein conformational Space with Structural Profiles.

Brian S. Olson, Kevin Molloy, S. Farid Hendi, Amarda Shehu

J. Bioinform. Comput. Biol., 2012

Basin Hopping as a General and Versatile Optimization Framework for the Characterization of Biological Macromolecules.

Brian S. Olson, Irina Hashmi, Kevin Molloy, Amarda Shehu

Adv. Artif. Intell., 2012

A tree-based search to bias sampling of protein decoy conformations.

Kevin Molloy, Amarda Shehu

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

Mapping conformational pathways between known functional protein states.

Kevin Molloy, Amarda Shehu

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

A robotics-inspired method to sample conformational paths connecting known functionally-relevant structures in protein systems.

Kevin Molloy, Amarda Shehu

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

Biased decoy sampling to aid the selection of near-native protein conformations.

Kevin Molloy, Amarda Shehu

Proceedings of the ACM International Conference on Bioinformatics, 2012

2011

In Search of the protein Native State with a Probabilistic Sampling Approach.

Brian S. Olson, Kevin Molloy, Amarda Shehu

J. Bioinform. Comput. Biol., 2011

Assembly of low-energy protein conformations with heterogeneous fragments.

Kevin Molloy, Amarda Shehu

Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

2010

Enhancing Sampling of the Conformational Space Near the Protein Native State.

Brian S. Olson, Kevin Molloy, Amarda Shehu

Proceedings of the Bio-Inspired Models of Network, Information, and Computing Systems, 2010