Eric Tannier

According to our database, Eric Tannier authored at least 56 papers between 2001 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

Phylogenetic reconciliation.

Hugo Menet, Vincent Daubin, Eric Tannier

PLoS Comput. Biol., November, 2022

Thirdkind: displaying phylogenetic encounters beyond 2-level reconciliation.

Simon Penel, Hugo Menet, Théo Tricou, Vincent Daubin, Eric Tannier

Bioinform., 2022

2020

Zombi: a phylogenetic simulator of trees, genomes and sequences that accounts for dead linages.

Adrián A. Davín, Théo Tricou, Eric Tannier, Damien M. de Vienne, Gergely J. Szöllosi

Bioinform., 2020

Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.

Nicolas Comte, Benoit Morel, Damir Hasic, Laurent Guéguen, Bastien Boussau, Vincent Daubin, Simon Penel, Céline Scornavacca, Manolo Gouy, Alexandros Stamatakis, Eric Tannier, David P. Parsons

Bioinform., 2020

2019

Gene tree reconciliation including transfers with replacement is NP-hard and FPT.

Damir Hasic, Eric Tannier

J. Comb. Optim., 2019

2018

Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes.

Yoann Anselmetti, Wandrille Duchemin, Eric Tannier, Cédric Chauve, Sèverine Bérard

BMC Genom., 2018

RecPhyloXML: a format for reconciled gene trees.

Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S. Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Céline Scornavacca, Gergely J. Szöllosi, Louxin Zhang, Eric Tannier, Vincent Daubin

Bioinform., 2018

2017

Gene tree reconciliation including transfers with replacement is hard and FPT.

Damir Hasic, Eric Tannier

CoRR, 2017

Gene tree species tree reconciliation with gene conversion.

Damir Hasic, Eric Tannier

CoRR, 2017

Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses.

Edwin Jacox, Mathias Weller, Eric Tannier, Céline Scornavacca

Bioinform., 2017

Algorithms for computing the double cut and join distance on both gene order and intergenic sizes.

Guillaume Fertin, Géraldine Jean, Eric Tannier

Algorithms Mol. Biol., 2017

2016

Sorting Signed Permutations by Reversal (Reversal Sequence).

Eric Tannier

Encyclopedia of Algorithms, 2016

Genome rearrangements with indels in intergenes restrict the scenario space.

Laurent Bulteau, Guillaume Fertin, Eric Tannier

BMC Bioinform., 2016

Genome Rearrangements on Both Gene Order and Intergenic Regions.

Guillaume Fertin, Géraldine Jean, Eric Tannier

Proceedings of the Algorithms in Bioinformatics - 16th International Workshop, 2016

Comparative Genomics on Artificial Life.

Priscila Biller, Carole Knibbe, Guillaume Beslon, Eric Tannier

Proceedings of the Pursuit of the Universal - 12th Conference on Computability in Europe, 2016

2015

Probabilistic modeling of the evolution of gene synteny within reconciled phylogenies.

Magali Semeria, Eric Tannier, Laurent Guéguen

BMC Bioinform., December, 2015

Moments of genome evolution by Double Cut-and-Join.

Priscila Biller, Laurent Guéguen, Eric Tannier

BMC Bioinform., December, 2015

2014

Counting and sampling SCJ small parsimony solutions.

István Miklós, Sándor Z. Kiss, Eric Tannier

Theor. Comput. Sci., 2014

2013

On sampling SCJ rearrangement scenarios

István Miklós, Sándor Z. Kiss, Eric Tannier

CoRR, 2013

Lateral gene transfer, rearrangement, reconciliation.

Murray Patterson, Gergely J. Szöllosi, Vincent Daubin, Eric Tannier

BMC Bioinform., 2013

Gene tree correction guided by orthology.

Manuel Lafond, Magali Semeria, Krister M. Swenson, Eric Tannier, Nadia El-Mabrouk

BMC Bioinform., 2013

FPSAC: fast phylogenetic scaffolding of ancient contigs.

Ashok Rajaraman, Eric Tannier, Cédric Chauve

Bioinform., 2013

Duplication, Rearrangement and Reconciliation: A Follow-Up 13 Years Later.

Cédric Chauve, Nadia El-Mabrouk, Laurent Guéguen, Magali Semeria, Eric Tannier

Proceedings of the Models and Algorithms for Genome Evolution, 2013

2012

Approximating the number of Double Cut-and-Join scenarios.

István Miklós, Eric Tannier

Theor. Comput. Sci., 2012

Linearization of ancestral multichromosomal genomes.

Ján Manuch, Murray Patterson, Roland Wittler, Cédric Chauve, Eric Tannier

BMC Bioinform., 2012

ANGES: reconstructing ANcestral GEnomeS maps.

Bradley R. Jones, Ashok Rajaraman, Eric Tannier, Cédric Chauve

Bioinform., 2012

Evolution of gene neighborhoods within reconciled phylogenies.

Sèverine Bérard, Coralie Gallien, Bastien Boussau, Gergely J. Szöllosi, Vincent Daubin, Eric Tannier

Bioinform., 2012

Preserving Inversion Phylogeny Reconstruction.

Matthias Bernt, Kun-Mao Chao, Jyun-Wei Kao, Martin Middendorf, Eric Tannier

Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012

2011

Reconstructing the architecture of the ancestral amniote genome.

Aïda Ouangraoua, Eric Tannier, Cédric Chauve

Bioinform., 2011

Mapping ancestral genomes with massive gene loss: A matrix sandwich problem.

Haris Gavranovic, Cédric Chauve, Jérôme Salse, Eric Tannier

Bioinform., 2011

Evolution Combinatoire, Algorithmique des Chromosomes.

Eric Tannier

, 2011

2010

Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods II.

Cédric Chauve, Haris Gavranovic, Aïda Ouangraoua, Eric Tannier

J. Comput. Biol., 2010

Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests.

Sophie S. Abby, Eric Tannier, Manolo Gouy, Vincent Daubin

BMC Bioinform., 2010

Bayesian sampling of genomic rearrangement scenarios via double cut and join.

István Miklós, Eric Tannier

Bioinform., 2010

Cassis: detection of genomic rearrangement breakpoints.

Christian Baudet, Claire Lemaitre, Zanoni Dias, Christian Gautier, Eric Tannier, Marie-France Sagot

Bioinform., 2010

Guided Genome Halving: Provably Optimal Solutions Provide Good Insights into the Preduplication Ancestral Genome of Saccharomyces Cerevisiae.

Haris Gavranovic, Eric Tannier

Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

2009

Computation of Perfect DCJ Rearrangement Scenarios with Linear and Circular Chromosomes.

Sèverine Bérard, Annie Chateau, Cédric Chauve, Christophe Paul, Eric Tannier

J. Comput. Biol., 2009

Multichromosomal median and halving problems under different genomic distances.

Eric Tannier, Chunfang Zheng, David Sankoff

BMC Bioinform., 2009

Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods.

Eric Tannier

Proceedings of the Comparative Genomics, International Workshop, 2009

Prediction of Contiguous Regions in the Amniote Ancestral Genome.

Aïda Ouangraoua, Frédéric Boyer, Andrew W. McPherson, Eric Tannier, Cédric Chauve

Proceedings of the Bioinformatics Research and Applications, 5th International Symposium, 2009

Combinatorics of Genome Rearrangements.

Guillaume Fertin, Anthony Labarre, Irena Rusu, Eric Tannier, Stéphane Vialette

Computational molecular biology, MIT Press, ISBN: 978-0-262-06282-4, 2009

2008

Sorting Signed Permutations by Reversal (Reversal Sequence).

Eric Tannier

Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008

Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution.

Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier

IEEE ACM Trans. Comput. Biol. Bioinform., 2008

A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and Its Application to Mammalian Genomes.

Cédric Chauve, Eric Tannier

PLoS Comput. Biol., 2008

Precise detection of rearrangement breakpoints in mammalian chromosomes.

Claire Lemaitre, Eric Tannier, Christian Gautier, Marie-France Sagot

BMC Bioinform., 2008

Multichromosomal Genome Median and Halving Problems.

Eric Tannier, Chunfang Zheng, David Sankoff

Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

Perfect DCJ Rearrangement.

Sèverine Bérard, Annie Chateau, Cédric Chauve, Christophe Paul, Eric Tannier

Proceedings of the Comparative Genomics, International Workshop, 2008

Reactive Stochastic Local Search Algorithms for the Genomic Median Problem.

Renaud Lenne, Christine Solnon, Thomas Stützle, Eric Tannier, Mauro Birattari

Proceedings of the Evolutionary Computation in Combinatorial Optimization, 2008

2007

Evolution under Reversals: Parsimony and Conservation of Common Intervals.

Yoan Diekmann, Marie-France Sagot, Eric Tannier

IEEE ACM Trans. Comput. Biol. Bioinform., 2007

Advances on sorting by reversals.

Eric Tannier, Anne Bergeron, Marie-France Sagot

Discret. Appl. Math., 2007

The Solution Space of Sorting by Reversals.

Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier

Proceedings of the Bioinformatics Research and Applications, Third International Symposium, 2007

2005

Perfect Sorting by Reversals.

Marie-France Sagot, Eric Tannier

Proceedings of the Computing and Combinatorics, 11th Annual International Conference, 2005

2004

On Metric Generators of Graphs.

András Sebö, Eric Tannier

Math. Oper. Res., 2004

Sorting by Reversals in Subquadratic Time.

Eric Tannier, Marie-France Sagot

Proceedings of the Combinatorial Pattern Matching, 15th Annual Symposium, 2004

2003

On a modular domination game.

Sylvain Gravier, Mehdi Mhalla, Eric Tannier

Theor. Comput. Sci., 2003

2001

Connected Joins in Graphs.

András Sebö, Eric Tannier

Proceedings of the Integer Programming and Combinatorial Optimization, 2001