Vincent Berry

According to our database, Vincent Berry authored at least 39 papers between 1993 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

Stop Reinventing the Wheel! Promoting Community Software in Computing Education.

Jeremiah J. Blanchard, John R. Hott, Vincent Berry, Rebecca Carroll, Bob Edmison, Richard Glassey, Oscar Karnalim, Brian Plancher, Seán Russell

Proceedings of the 2022 Working Group Reports on Innovation and Technology in Computer Science Education, 2022

Leveraging Community Software in CS Education to Avoid Reinventing the Wheel.

Jeremiah J. Blanchard, John R. Hott, Vincent Berry, Rebecca Carroll, Bob Edmison, Richard Glassey, Oscar Karnalim, Brian Plancher, Seán Russell

Proceedings of the ITiCSE 2022: Innovation and Technology in Computer Science Education, Dublin, Ireland, July 8, 2022

ShellOnYou: Learning by Doing Unix Command Line.

Vincent Berry, Arnaud Castelltort, Chrysta Pelissier, Marion Rousseau, Chouki Tibermacine

Proceedings of the ITiCSE 2022: Innovation and Technology in Computer Science Education, Dublin, Ireland, July 8, 2022

2021

On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo.

Charles-Elie Rabier, Vincent Berry, Marnus Stoltz, João D. Santos, Wensheng Wang, Jean-Christophe Glaszmann, Fabio Pardi, Céline Scornavacca

PLoS Comput. Biol., 2021

2020

Scanning Phylogenetic Networks Is NP-hard.

Vincent Berry, Céline Scornavacca, Mathias Weller

Proceedings of the SOFSEM 2020: Theory and Practice of Computer Science, 2020

2018

RecPhyloXML: a format for reconciled gene trees.

Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S. Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Céline Scornavacca, Gergely J. Szöllosi, Louxin Zhang, Eric Tannier, Vincent Daubin

Bioinform., 2018

2016

Maximum Compatible Tree.

Vincent Berry

Encyclopedia of Algorithms, 2016

SylvX: a viewer for phylogenetic tree reconciliations.

François Chevenet, Jean-Philippe Doyon, Céline Scornavacca, Edwin Jacox, Emmanuelle Jousselin, Vincent Berry

Bioinform., 2016

2013

Representing a Set of Reconciliations in a Compact Way.

Céline Scornavacca, Wojciech Paprotny, Vincent Berry, Vincent Ranwez

J. Bioinform. Comput. Biol., 2013

Reconciliation and local gene tree rearrangement can be of mutual profit.

Thi Hau Nguyen, Vincent Ranwez, Stéphanie Pointet, Anne-Muriel Arigon Chifolleau, Jean-Philippe Doyon, Vincent Berry

Algorithms Mol. Biol., 2013

2012

Quartets and Unrooted phylogenetic Networks.

Philippe Gambette, Vincent Berry, Christophe Paul

J. Bioinform. Comput. Biol., 2012

Accounting for Gene Tree Uncertainties Improves Gene Trees and Reconciliation Inference.

Thi Hau Nguyen, Jean-Philippe Doyon, Stéphanie Pointet, Anne-Muriel Arigon Chifolleau, Vincent Ranwez, Vincent Berry

Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012

2011

Building species trees from larger parts of phylogenomic databases.

Céline Scornavacca, Vincent Berry, Vincent Ranwez

Inf. Comput., 2011

Models, algorithms and programs for phylogeny reconciliation.

Jean-Philippe Doyon, Vincent Ranwez, Vincent Daubin, Vincent Berry

Briefings Bioinform., 2011

2010

Fixed-Parameter Tractability of the Maximum Agreement Supertree Problem.

Sylvain Guillemot, Vincent Berry

IEEE ACM Trans. Comput. Biol. Bioinform., 2010

ScripTree: scripting phylogenetic graphics.

François Chevenet, Olivier Croce, Maxime Hebrard, Richard Christen, Vincent Berry

Bioinform., 2010

An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers.

Jean-Philippe Doyon, Céline Scornavacca, K. Yu. Gorbunov, Gergely J. Szöllosi, Vincent Ranwez, Vincent Berry

Proceedings of the Comparative Genomics - International Workshop, 2010

2009

Linear time 3-approximation for the MAST problem.

Vincent Berry, Christophe Paul, Sylvain Guillemot, François Nicolas

ACM Trans. Algorithms, 2009

On the approximability of the Maximum Agreement SubTree and Maximum Compatible Tree problems.

Sylvain Guillemot, François Nicolas, Vincent Berry, Christophe Paul

Discret. Appl. Math., 2009

Computing galled networks from real data.

Daniel H. Huson, Regula Rupp, Vincent Berry, Philippe Gambette, Christophe Paul

Bioinform., 2009

From Gene Trees to Species Trees through a Supertree Approach.

Céline Scornavacca, Vincent Berry, Vincent Ranwez

Proceedings of the Language and Automata Theory and Applications, 2009

The Structure of Level-k Phylogenetic Networks.

Philippe Gambette, Vincent Berry, Christophe Paul

Proceedings of the Combinatorial Pattern Matching, 20th Annual Symposium, 2009

2008

Maximum Compatible Tree.

Vincent Berry

Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008

PhySIC_IST: cleaning source trees to infer more informative supertrees.

Céline Scornavacca, Vincent Berry, Vincent Lefort, Emmanuel J. P. Douzery, Vincent Ranwez

BMC Bioinform., 2008

From Constrained to Unconstrained Maximum Agreement Subtree in Linear Time.

Vincent Berry, Zeshan Peng, H. F. Ting

Algorithmica, 2008

On building and comparing trees Application to supertrees in phylogenetics.

Vincent Berry

, 2008

2007

Maximum agreement and compatible supertrees.

Vincent Berry, François Nicolas

J. Discrete Algorithms, 2007

Developing new formulations and relaxations of single stage capacitated warehouse location problem (SSCWLP): Empirical investigation for assessing relative strengths and computational effort.

R. R. K. Sharma, Vincent Berry

Eur. J. Oper. Res., 2007

2006

Improved Parameterized Complexity of the Maximum Agreement Subtree and Maximum Compatible Tree Problems.

Vincent Berry, François Nicolas

IEEE ACM Trans. Comput. Biol. Bioinform., 2006

2005

On the Approximation of Computing Evolutionary Trees.

Vincent Berry, Sylvain Guillemot, François Nicolas, Christophe Paul

Proceedings of the Computing and Combinatorics, 11th Annual International Conference, 2005

2004

Maximum Agreement and Compatible Supertrees (Extended Abstract).

Vincent Berry, François Nicolas

Proceedings of the Combinatorial Pattern Matching, 15th Annual Symposium, 2004

2001

A Structured Family of Clustering and Tree Construction Methods.

David Bryant, Vincent Berry

Adv. Appl. Math., 2001

2000

Inferring evolutionary trees with strong combinatorial evidence.

Vincent Berry, Olivier Gascuel

Theor. Comput. Sci., 2000

A practical algorithm for recovering the best supported edges of an evolutionary tree (extended abstract).

Vincent Berry, David Bryant, Tao Jiang, Paul E. Kearney, Ming Li, Todd Wareham, Haoyong Zhang

Proceedings of the Eleventh Annual ACM-SIAM Symposium on Discrete Algorithms, 2000

1999

Faster reliable phylogenetic analysis.

Vincent Berry, David Bryant

Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999

Quartet Cleaning: Improved Algorithms and Simulations.

Vincent Berry, Tao Jiang, Paul E. Kearney, Ming Li, Todd Wareham

Proceedings of the Algorithms, 1999

1995

Évaluation répartie asynchrone de (certaines) requêtes DATALOG.

Vincent Berry, Philippe Ézéquel

Proceedings of the JFPLC'95, 1995

1994

Distinguer les variables distinguées.

Vincent Berry, Philippe Ézéquel

Proceedings of the JFPLC'94, 1994

1993

Generating Goals and Their Use In Recursive Query Processing.

Vincent Berry, Philippe Ézéquel

Proceedings of the Logic Programming, 1993