Justin Guinney

Orcid: 0000-0003-1477-1888

According to our database1, Justin Guinney authored at least 30 papers between 2006 and 2024.

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Bibliography

2024
AI Competitions and Benchmarks, Practical issues: Proposals, grant money, sponsors, prizes, dissemination, publicity.
CoRR, 2024

2023
Evaluation of crowdsourced mortality prediction models as a framework for assessing artificial intelligence in medicine.
J. Am. Medical Informatics Assoc., December, 2023

2022
Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C).
J. Am. Medical Informatics Assoc., 2022

A Multifaceted Benchmarking of Synthetic Electronic Health Record Generation Models.
CoRR, 2022

The NLP Sandbox: an efficient model-to-data system to enable federated and unbiased evaluation of clinical NLP models.
CoRR, 2022

Assessing Machine Learning Based Generators for Synthetic Electronic Health Records: A Benchmarking.
Proceedings of the AMIA 2022, 2022

2021
Knowledge-based classification of fine-grained immune cell types in single-cell RNA-Seq data.
Briefings Bioinform., September, 2021

Crowdsourced identification of multi-target kinase inhibitors for RET- and TAU- based disease: The Multi-Targeting Drug DREAM Challenge.
PLoS Comput. Biol., 2021

Preview of "Interpretable systems biomarkers predict response to immune-checkpoint inhibitors".
Patterns, 2021

The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment.
J. Am. Medical Informatics Assoc., 2021

Establishing the reliability of algorithms.
Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021

A Continuous Crowd-sourced Challenge for Benchmarking COVID-19 Health Outcome Prediction.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

COVID-19 Mortality Prediction among Patients with Cancer Using a Large National Cohort.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020
Piloting a model-to-data approach to enable predictive analytics in health care through patient mortality prediction.
J. Am. Medical Informatics Assoc., 2020

Global research consortia and data harmonization projects drive the clinical interpretation of cancers.
Proceedings of the AMIA 2020, 2020

2018
Probing the chemical-biological relationship space with the Drug Target Explorer.
J. Cheminformatics, 2018

2016
rCGH: a comprehensive array-based genomic profile platform for precision medicine.
Bioinform., 2016

Personalized Hypothesis Tests for Detecting Medication Response in Parkinson Disease Patients Using iPhone Sensor Data.
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

2015
The NIH BD2K center for big data in translational genomics.
J. Am. Medical Informatics Assoc., 2015

Stepwise Group Sparse Regression (SGSR): Gene-Set-Based Pharmacogenomic Predictive Models with Stepwise Selection of Functional Priors.
Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

2014
Systematic Assessment of Analytical Methods for Drug Sensitivity Prediction from Cancer Cell Line Data.
Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

2013
Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling.
PLoS Comput. Biol., 2013

GSVA: gene set variation analysis for microarray and RNA-Seq data.
BMC Bioinform., 2013

2012
Correlation set analysis: detecting active regulators in disease populations using prior causal knowledge.
BMC Bioinform., 2012

2011
Estimating variable structure and dependence in multitask learning via gradients.
Mach. Learn., 2011

2010
Learning Gradients: Predictive Models that Infer Geometry and Statistical Dependence.
J. Mach. Learn. Res., 2010

2009
The Geometry of Cancer.
PhD thesis, 2009

2008
Modeling Cancer Progression via Pathway Dependencies.
PLoS Comput. Biol., 2008

F-Seq: a feature density estimator for high-throughput sequence tags.
Bioinform., 2008

2006
Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006


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