Ludovic Cottret

According to our database, Ludovic Cottret authored at least 17 papers between 2007 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2021

Learning Boolean Controls in Regulated Metabolic Networks: A Case-Study.

Kerian Thuillier, Caroline Baroukh, Alexander Bockmayr, Ludovic Cottret, Loïc Paulevé, Anne Siegel

Proceedings of the Computational Methods in Systems Biology, 2021

2018

MetExplore: collaborative edition and exploration of metabolic networks.

Ludovic Cottret, Clément Frainay, Maxime Chazalviel, Floréal Cabanettes, Yoann Gloaguen, Etienne Camenen, Benjamin Merlet, Stéphanie Heux, Jean-Charles Portais, Nathalie Poupin, Florence Vinson, Fabien Jourdan

Nucleic Acids Res., 2018

MetExploreViz: web component for interactive metabolic network visualization.

Maxime Chazalviel, Clément Frainay, Nathalie Poupin, Florence Vinson, Benjamin Merlet, Yoann Gloaguen, Ludovic Cottret, Fabien Jourdan

Bioinform., 2018

2015

TrypanoCyc: a community-led biochemical pathways database for <i>Trypanosoma brucei</i>.

Sanu Shameer, Flora J. Logan-Klumpler, Florence Vinson, Ludovic Cottret, Benjamin Merlet, Fiona Achcar, Michael Boshart, Matthew Berriman, Rainer Breitling, Frédéric Bringaud, Peter Bütikofer, Amy M. Cattanach, Bridget Bannerman-Chukualim, Darren J. Creek, Kathryn Crouch, Harry P. de Koning, Hubert Denise, Charles Ebikeme, Alan H. Fairlamb, Michael A. J. Ferguson, Michael L. Ginger, Christiane Hertz-Fowler, Eduard J. Kerkhoven, Pascal Mäser, Paul A. M. Michels, Archana Nayak, David W. Nes, Derek P. Nolan, Christian Olsen, Fatima Silva-Franco, Terry K. Smith, Martin C. Taylor, Aloysius G. M. Tielens, Michael D. Urbaniak, Jaap J. van Hellemond, Isabel M. Vincent, Shane R. Wilkinson, Susan Wyllie, Fred R. Opperdoes, Michael P. Barrett, Fabien Jourdan

Nucleic Acids Res., 2015

FlexFlux: combining metabolic flux and regulatory network analyses.

Lucas Marmiesse, Rémi Peyraud, Ludovic Cottret

BMC Syst. Biol., 2015

2014

Identification and phylogenetic analyses of VASt, an uncharacterized protein domain associated with lipid-binding domains in Eukaryotes.

Mehdi Khafif, Ludovic Cottret, Claudine Balagué, Sylvain Raffaele

BMC Bioinform., 2014

Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure.

Paulo Vieira Milreu, Cecilia Coimbra Klein, Ludovic Cottret, Vicente Acuña, Etienne Birmelé, Michele Borassi, Christophe Junot, Alberto Marchetti-Spaccamela, Andrea Marino, Leen Stougie, Fabien Jourdan, Pierluigi Crescenzi, Vincent Lacroix, Marie-France Sagot

Bioinform., 2014

2012

Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets.

Vicente Acuña, Etienne Birmelé, Ludovic Cottret, Pierluigi Crescenzi, Fabien Jourdan, Vincent Lacroix, Alberto Marchetti-Spaccamela, Andrea Marino, Paulo Vieira Milreu, Marie-France Sagot, Leen Stougie

Theor. Comput. Sci., 2012

Algorithms and complexity of enumerating minimal precursor sets in genome-wide metabolic networks.

Vicente Acuña, Paulo Vieira Milreu, Ludovic Cottret, Alberto Marchetti-Spaccamela, Leen Stougie, Marie-France Sagot

Bioinform., 2012

Systrip: A Visual Environment for the Investigation of Time-series Data in the Context of Metabolic Networks.

Jonathan Dubois, Ludovic Cottret, Amine Ghozlane, David Auber, Frédéric Bringaud, Patricia Thébault, Fabien Jourdan, Romain Bourqui

Proceedings of the 16th International Conference on Information Visualisation, 2012

2011

CycADS: an annotation database system to ease the development and update of BioCyc databases.

Augusto F. Vellozo, Amélie S. Véron, Patrice Baa-Puyoulet, Jaime Huerta-Cepas, Ludovic Cottret, Gérard Febvay, Federica Calevro, Yvan Rahbé, Angela E. Douglas, Toni Gabaldón, Marie-France Sagot, Hubert Charles, Stefano Colella

Database J. Biol. Databases Curation, 2011

2010

Graph-Based Analysis of the Metabolic Exchanges between Two Co-Resident Intracellular Symbionts, <i>Baumannia cicadellinicola</i> and <i>Sulcia muelleri</i>, with Their Insect Host, <i>Homalodisca coagulata</i>.

Ludovic Cottret, Paulo Vieira Milreu, Vicente Acuña, Alberto Marchetti-Spaccamela, Leen Stougie, Hubert Charles, Marie-France Sagot

PLoS Comput. Biol., 2010

MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks.

Ludovic Cottret, David Wildridge, Florence Vinson, Michael P. Barrett, Hubert Charles, Marie-France Sagot, Fabien Jourdan

Nucleic Acids Res., 2010

2009

Deciphering the connectivity structure of biological networks using MixNet.

Franck Picard, Vincent Miele, Jean-Jacques Daudin, Ludovic Cottret, Stéphane Robin

BMC Bioinform., 2009

2008

An Introduction to Metabolic Networks and Their Structural Analysis.

Vincent Lacroix, Ludovic Cottret, Patricia Thébault, Marie-France Sagot

IEEE ACM Trans. Comput. Biol. Bioinform., 2008

Enumerating Precursor Sets of Target Metabolites in a Metabolic Network.

Ludovic Cottret, Paulo Vieira Milreu, Vicente Acuña, Alberto Marchetti-Spaccamela, Fábio Viduani Martinez, Marie-France Sagot, Leen Stougie

Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

2007

Metabolic network visualization eliminating node redundance and preserving metabolic pathways.

Romain Bourqui, Ludovic Cottret, Vincent Lacroix, David Auber, Patrick Mary, Marie-France Sagot, Fabien Jourdan

BMC Syst. Biol., 2007