Fabien Jourdan

Orcid: 0000-0001-9401-2894

According to our database1, Fabien Jourdan authored at least 33 papers between 2003 and 2024.

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Bibliography

2024
Genome scale metabolic network modelling for metabolic profile predictions.
PLoS Comput. Biol., February, 2024

2021
Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis.
PLoS Comput. Biol., 2021

DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks.
PLoS Comput. Biol., 2021

FORUM: building a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.
Bioinform., 2021

2019
MetaboRank: network-based recommendation system to interpret and enrich metabolomics results.
Bioinform., 2019

2018
MetExplore: collaborative edition and exploration of metabolic networks.
Nucleic Acids Res., 2018

MetExploreViz: web component for interactive metabolic network visualization.
Bioinform., 2018

2017
The future of metabolomics in ELIXIR.
F1000Research, 2017

Computational methods to identify metabolic sub-networks based on metabolomic profiles.
Briefings Bioinform., 2017

2015
TrypanoCyc: a community-led biochemical pathways database for <i>Trypanosoma brucei</i>.
Nucleic Acids Res., 2015

2014
ProbMetab: an <i>R</i> package for Bayesian probabilistic annotation of LC-MS-based metabolomics.
Bioinform., 2014

Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure.
Bioinform., 2014

2012
Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets.
Theor. Comput. Sci., 2012

Flux Analysis of the <i>Trypanosoma brucei</i> Glycolysis Based on a Multiobjective-Criteria Bioinformatic Approach.
Adv. Bioinformatics, 2012

Systrip: A Visual Environment for the Investigation of Time-series Data in the Context of Metabolic Networks.
Proceedings of the 16th International Conference on Information Visualisation, 2012

2011
Communities and hierarchical structures in dynamic social networks: analysis and visualization.
Soc. Netw. Anal. Min., 2011

Domain specific vs Generic Network Visualization: an Evaluation with Metabolic Networks.
Proceedings of the Twelfth Australasian User Interface Conference, 2011

2010
MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks.
Nucleic Acids Res., 2010

2009
Un algorithme stable de décomposition pour l'analyse des réseaux sociaux dynamiques.
Proceedings of the Extraction et gestion des connaissances (EGC'2009), 2009

A Stable Decomposition Algorithm for Dynamic Social Network Analysis.
Proceedings of the Advances in Knowledge Discovery and Management [Best of EGC 2009, 2009

Detecting Structural Changes and Command Hierarchies in Dynamic Social Networks.
Proceedings of the 2009 International Conference on Advances in Social Network Analysis and Mining, 2009

2008
MetaNetter: inference and visualization of high-resolution metabolomic networks.
Bioinform., 2008

Revealing Subnetwork Roles using Contextual Visualization: Comparison of Metabolic Networks.
Proceedings of the 12th International Conference on Information Visualisation, 2008

2007
Metabolic network visualization eliminating node redundance and preserving metabolic pathways.
BMC Syst. Biol., 2007

2006
Multiscale Scatterplot Matrix for Visual and Interactive Exploration of Metabonomic Data.
Proceedings of the Pixelization Paradigm, First Visual Information Expert Workshop, 2006

Metabolic network visualization using constraint planar graph drawing algorithm.
Proceedings of the 10th International Conference on Information Visualisation, 2006

2005
Interactive Refinement of Multi-scale Network Clusterings.
Proceedings of the 9th International Conference on Information Visualisation, 2005

Une approche MDS hybride pour l'exploration visuelle interactive.
Proceedings of the 17th international conference on Francophone sur l'Interaction Homme-Machine, 2005

2004
Multiscale hybrid MDS.
Proceedings of the 8th International Conference on Information Visualisation, 2004

Metric-Based Network Exploration and Multiscale Scatterplot.
Proceedings of the 10th IEEE Symposium on Information Visualization (InfoVis 2004), 2004

2003
Tool for metabolic and regulatory pathways visual analysis.
Proceedings of the Visualization and Data Analysis 2003, 2003

Software Components Capture Using Graph Clustering.
Proceedings of the 11th International Workshop on Program Comprehension (IWPC 2003), 2003

Multiscale Visualization of Small World Networks.
Proceedings of the 9th IEEE Symposium on Information Visualization (InfoVis 2003), 2003


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