Manuel Holtgrewe

According to our database, Manuel Holtgrewe authored at least 16 papers between 2010 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

ClearCNV: CNV calling from NGS panel data in the presence of ambiguity and noise.

Vinzenz May, Leonard Koch, Björn Fischer-Zirnsak, Denise Horn, Petra Gehle, Uwe Kornak, Dieter Beule, Manuel Holtgrewe

Bioinform., 2022

2021

Sustainable data analysis with Snakemake.

Felix Mölder, Kim Philipp Jablonski, Brice Letcher, Michael B. Hall, Christopher Tomkins-Tinch, Vanessa V. Sochat, Jan Forster, Soohyun Lee, Sven Twardziok, Alexander Kanitz, Andreas Wilm, Manuel Holtgrewe, Sven Rahmann, Sven Nahnsen, Johannes Köster

F1000Research, 2021

2020

VarFish: comprehensive DNA variant analysis for diagnostics and research.

Manuel Holtgrewe, Oliver Stolpe, Mikko Nieminen, Stefan Mundlos, Alexej Knaus, Uwe Kornak, Dominik Seelow, Lara Segebrecht, Malte Spielmann, Björn Fischer-Zirnsak, Felix Boschann, Ute Scholl, Nadja Ehmke, Dieter Beule

Nucleic Acids Res., 2020

SODAR Core: a Django-based framework for scientific data management and analysis web apps.

Mikko Nieminen, Oliver Stolpe, Franziska Schumann, Manuel Holtgrewe, Dieter Beule

J. Open Source Softw., 2020

DigestiFlow: from BCL to FASTQ with ease.

Manuel Holtgrewe, Clemens Messerschmidt, Mikko Nieminen, Dieter Beule

Bioinform., 2020

2019

AltamISA: a Python API for ISA-Tab files.

Mathias Kuhring, Mikko Nieminen, Jennifer Kirwan, Dieter Beule, Manuel Holtgrewe

J. Open Source Softw., 2019

2017

HLA-MA: simple yet powerful matching of samples using HLA typing results.

Clemens Messerschmidt, Manuel Holtgrewe, Dieter Beule

Bioinform., 2017

2016

VCFPy: a Python 3 library with good support for both reading and writing VCF.

Manuel Holtgrewe, Dieter Beule

J. Open Source Softw., 2016

2015

Engineering Algorithms for Personal Genome Pipelines.

Manuel Holtgrewe

PhD thesis, 2015

Methods for the detection and assembly of novel sequence in high-throughput sequencing data.

Manuel Holtgrewe, Léon Kuchenbecker, Knut Reinert

Bioinform., 2015

2014

Genome alignment with graph data structures: a comparison.

Birte Kehr, Kathrin Trappe, Manuel Holtgrewe, Knut Reinert

BMC Bioinform., 2014

Fiona: a parallel and automatic strategy for read error correction.

Marcel H. Schulz, David Weese, Manuel Holtgrewe, Viktoria Dimitrova, Sijia Niu, Knut Reinert, Hugues Richard

Bioinform., 2014

2012

RazerS 3: Faster, fully sensitive read mapping.

David Weese, Manuel Holtgrewe, Knut Reinert

Bioinform., 2012

2011

A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping.

Manuel Holtgrewe, Anne-Katrin Emde, David Weese, Knut Reinert

BMC Bioinform., 2011

2010

Engineering a scalable high quality graph partitioner.

Manuel Holtgrewe, Peter Sanders, Christian Schulz

Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

Simple and Fast Nearest Neighbor Search.

Marcel Birn, Manuel Holtgrewe, Peter Sanders, Johannes Singler

Proceedings of the Twelfth Workshop on Algorithm Engineering and Experiments, 2010