Maria A. Doyle

According to our database, Maria A. Doyle authored at least 9 papers between 2009 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

Learning and teaching biological data science in the Bioconductor community.

Jenny Drnevich, Frederick J. Tan, Fabricio Almeida-Silva, Robert Castelo, Aedín C. Culhane, Sean R. Davis, Maria A. Doyle, Ludwig Geistlinger, Andrew R. Ghazi, Susan P. Holmes, Leo Lahti, Alexandru Mahmoud, Kozo Nishida, Marcel Ramos, Kevin C. Rue-Albrecht, David J. H. Shih, Laurent Gatto, Charlotte Soneson

PLoS Comput. Biol., 2025

2024

Learning and teaching biological data science in the Bioconductor community.

Jenny Drnevich, Frederick J. Tan, Fabricio Almeida-Silva, Robert Castelo, Aedín C. Culhane, Sean Davis, Maria A. Doyle, Susan P. Holmes, Leo Lahti, Alexandru Mahmoud, Kozo Nishida, Marcel Ramos, Kevin C. Rue-Albrecht, David J. H. Shih, Laurent Gatto, Charlotte Soneson

CoRR, 2024

2023

Galaxy Training: A powerful framework for teaching!

Saskia D. Hiltemann, Helena Rasche, Simon L. Gladman, Hans-Rudolf Hotz, Delphine Larivière, Daniel J. Blankenberg, Pratik D. Jagtap, Thomas Wollmann, Anthony Bretaudeau, Nadia Goué, Timothy J. Griffin, Coline Royaux, Yvan Le Bras, Subina P. Mehta, Anna Syme, Frederik Coppens, Bert Droesbeke, Nicola Soranzo, Wendi A. Bacon, Fotis E. Psomopoulos, Cristóbal Gallardo-Alba, John Davis, Melanie Christine Föll, Matthias Fahrner, Maria A. Doyle, Beatriz Serrano-Solano, Anne Fouilloux, Peter van Heusden, Wolfgang Maier, Dave Clements, Florian Heyl, The Galaxy Team, Björn A. Grüning, Bérénice Batut

PLoS Comput. Biol., January, 2023

2021

Interfacing Seurat with the R tidy universe.

Stefano Mangiola, Maria A. Doyle, Anthony T. Papenfuss

Bioinform., November, 2021

2019

The RNA workbench 2.0: next generation RNA data analysis.

Jörg Fallmann, Pavankumar Videm, Andrea Bagnacani, Bérénice Batut, Maria A. Doyle, Tomas Klingström, Florian Eggenhofer, Peter F. Stadler, Rolf Backofen, Björn A. Grüning

Nucleic Acids Res., 2019

2012

CONTRA: copy number analysis for targeted resequencing.

Jason Li, Richard Lupat, Kaushalya C. Amarasinghe, Ella R. Thompson, Maria A. Doyle, Georgina L. Ryland, Richard W. Tothill, Saman K. Halgamuge, Ian G. Campbell, Kylie L. Gorringe

Bioinform., 2012

2011

An integrative bioinformatic predictor of protein sub-cellular localisation in malaria.

Ben J. Woodcroft, Robert Radloff, Lee M. Yeoh, Kristie-Lee Scanlon, Maria A. Doyle, Giel G. van Dooren, Geoffrey I. McFadden, Christopher J. Tonkin, Terence P. Speed, Stuart A. Ralph

BMC Bioinform., 2011

2010

Designing and implementing chemoinformatic approaches in TDR Targets Database: linking genes to chemical compounds in tropical disease causing pathogens.

María P. Magariños, John P. Overington, Santiago J. Carmona, Dhanasekaran Shanmugam, Maria A. Doyle, Stuart A. Ralph, Gregory J. Crowther, Christiane Hertz-Fowler, Solomon Nwaka, Matthew Berriman, David S. Roos, Wesley C. Van Voorhis, Fernán Agüero

BMC Bioinform., 2010

2009

LeishCyc: a biochemical pathways database for Leishmania major.

Maria A. Doyle, James I. MacRae, David P. De Souza, Eleanor C. Saunders, Malcolm J. McConville, Vladimir A. Likic

BMC Syst. Biol., 2009