Mark D'Souza

According to our database, Mark D'Souza authored at least 15 papers between 1998 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2019

Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources.

Dinanath Sulakhe, Mark D'Souza, Sheng Wang, Sandhya Balasubramanian, Prashanth Athri, Bingqing Xie, Stefan Canzar, Gady Agam, T. Conrad Gilliam, Natalia Maltsev

Briefings Bioinform., 2019

2016

Lynx: a knowledge base and an analytical workbench for integrative medicine.

Dinanath Sulakhe, Bingqing Xie, Andrew Taylor, Mark D'Souza, Sandhya Balasubramanian, Somaye Hashemifar, Steven White, Utpal J. Dave, Gady Agam, Jinbo Xu, Sheng Wang, T. Conrad Gilliam, Natalia Maltsev

Nucleic Acids Res., 2016

2015

A RESTful API for Accessing Microbial Community Data for MG-RAST.

Andreas Wilke, Jared Bischof, Travis Harrison, Tom Brettin, Mark D'Souza, Wolfgang Gerlach, Hunter Matthews, Tobias Paczian, Jared Wilkening, Elizabeth M. Glass, Narayan Desai, Folker Meyer

PLoS Comput. Biol., 2015

2014

Skyport: container-based execution environment management for multi-cloud scientific workflows.

Wolfgang Gerlach, Wei Tang, Kevin P. Keegan, Travis Harrison, Andreas Wilke, Jared Bischof, Mark D'Souza, Scott Devoid, Daniel E. Murphy-Olson, Narayan Desai, Folker Meyer

Proceedings of the 5th International Workshop on Data-Intensive Computing in the Clouds, 2014

2012

A Platform-Independent Method for Detecting Errors in Metagenomic Sequencing Data: DRISEE.

Kevin P. Keegan, William L. Trimble, Jared Wilkening, Andreas Wilke, Travis Harrison, Mark D'Souza, Folker Meyer

PLoS Comput. Biol., 2012

Short-read reading-frame predictors are not created equal: sequence error causes loss of signal.

William L. Trimble, Kevin P. Keegan, Mark D'Souza, Andreas Wilke, Jared Wilkening, Jack A. Gilbert, Folker Meyer

BMC Bioinform., 2012

2008

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.

Folker Meyer, Daniel Paarmann, Mark D'Souza, Robert Olson, Elizabeth M. Glass, Michael Kubal, Tobias Paczian, Alexis A. Rodriguez, Rick Stevens, Andreas Wilke, Jared Wilkening, Robert A. Edwards

BMC Bioinform., 2008

2007

Sentra: a database of signal transduction proteins for comparative genome analysis.

Mark D'Souza, Elizabeth M. Glass, Mustafa H. Syed, Yi Zhang, Alexis A. Rodriguez, Natalia Maltsev, Michael Y. Galperin

Nucleic Acids Res., 2007

2006

PUMA2 - grid-based high-throughput analysis of genomes and metabolic pathways.

Natalia Maltsev, Elizabeth M. Glass, Dinanath Sulakhe, Alexis A. Rodriguez, Mustafa H. Syed, Tanuja Bompada, Yi Zhang, Mark D'Souza

Nucleic Acids Res., 2006

2005

GNARE: an environment for grid-based high-throughput genome analysis.

Dinanath Sulakhe, Alex A. Rodriguez, Mark D'Souza, Michael Wilde, Veronika Nefedova, Ian T. Foster, Natalia Maltsev

Proceedings of the 5th International Symposium on Cluster Computing and the Grid (CCGrid 2005), 2005

2003

The ERGOTM genome analysis and discovery system.

Ross A. Overbeek, Niels Larsen, Theresa Walunas, Mark D'Souza, Gordon D. Pusch, Evgeni Selkov Jr., Konstantinos Liolios, Viktor Joukov, Denis Kaznadzey, Iain Anderson, Anamitra Bhattacharyya, Henry Burd, Warren Gardner, Paul Hanke, Vinayak Kapatral, Natalia Mikhailova, Olga Vassieva, Andrei Osterman, Veronika Vonstein, Michael Fonstein, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2003

2000

WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction.

Ross A. Overbeek, Niels Larsen, Gordon D. Pusch, Mark D'Souza, Evgeni Selkov Jr., Nikos Kyrpides, Michael Fonstein, Natalia Maltsev, Evgeni Selkov

Nucleic Acids Res., 2000

SENTRA, a database of signal transduction proteins.

Mark D'Souza, Margaret F. Romine, Natalia Maltsev

Nucleic Acids Res., 2000

PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance.

Graziano Pesole, Sabino Liuni, Mark D'Souza

Bioinform., 2000

1998

Use of contiguity on the chromosome to predict functional coupling.

Ross A. Overbeek, Michael Fonstein, Mark D'Souza, Gordon D. Pusch, Natalia Maltsev

Silico Biol., 1998