Folker Meyer

According to our database1, Folker Meyer authored at least 33 papers between 1996 and 2019.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.



In proceedings 
PhD thesis 





Federation in genomics pipelines: techniques and challenges.
Briefings in Bioinformatics, 2019

SOPHIA: Online Reconfiguration of Clustered NoSQL Databases for Time-Varying Workloads.
Proceedings of the 2019 USENIX Annual Technical Conference, 2019

Rafiki: a middleware for parameter tuning of NoSQL datastores for dynamic metagenomics workloads.
Proceedings of the 18th ACM/IFIP/USENIX Middleware Conference, Las Vegas, NV, USA, December 11, 2017

Suitability of NoSQL systems - Cassandra and ScyllaDB - For IoT workloads.
Proceedings of the 9th International Conference on Communication Systems and Networks, 2017

The MG-RAST metagenomics database and portal in 2015.
Nucleic Acids Research, 2016

A Case Study in Using Discrete-Event Simulation to Improve the Scalability of MG-RAST.
Proceedings of the 2016 annual ACM Conference on SIGSIM Principles of Advanced Discrete Simulation, 2016

A RESTful API for Accessing Microbial Community Data for MG-RAST.
PLoS Computational Biology, 2015

Container Orchestration for Scientific Workflows.
Proceedings of the 2015 IEEE International Conference on Cloud Engineering, 2015

Shock: Active Storage for Multicloud Streaming Data Analysis.
Proceedings of the 2nd IEEE/ACM International Symposium on Big Data Computing, 2015

Do specialized distributed frameworks for bioinformatics applications obtain better performance over generic ones?
Proceedings of the 6th ACM Conference on Bioinformatics, 2015

Skyport: container-based execution environment management for multi-cloud scientific workflows.
Proceedings of the 5th International Workshop on Data-Intensive Computing in the Clouds, 2014

Data-Aware Resource Scheduling for Multicloud Workflows: A Fine-Grained Simulation Approach.
Proceedings of the IEEE 6th International Conference on Cloud Computing Technology and Science, 2014

Workload characterization for MG-RAST metagenomic data analytics service in the cloud.
Proceedings of the 2014 IEEE International Conference on Big Data, 2014

A scalable data analysis platform for metagenomics.
Proceedings of the 2013 IEEE International Conference on Big Data, 2013

A Platform-Independent Method for Detecting Errors in Metagenomic Sequencing Data: DRISEE.
PLoS Computational Biology, 2012

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools.
BMC Bioinformatics, 2012

Short-read reading-frame predictors are not created equal: sequence error causes loss of signal.
BMC Bioinformatics, 2012

An experience report: porting the MG-RAST rapid metagenomics analysis pipeline to the cloud.
Concurrency and Computation: Practice and Experience, 2011

Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG.
BMC Bioinformatics, 2011

Proposal for Open Discussion - Informatics Challenges for Next Generation Sequencing Metagenomics Experiments.
Proceedings of the BIOINFORMATICS 2011, 2011

Predicted Relative Metabolomic Turnover - Predicting Changes in the Environmental Metabolome from the Metagenome.
Proceedings of the BIOINFORMATICS 2011, 2011

The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes.
PLoS Computational Biology, 2009

Using clouds for metagenomics: A case study.
Proceedings of the 2009 IEEE International Conference on Cluster Computing, August 31, 2009

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.
BMC Bioinformatics, 2008

The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation.
Nucleic Acids Research, 2007

Finding novel genes in bacterial communities isolated from the environment.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser.
Nucleic Acids Research, 2005

BACCardI-a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison.
Bioinformatics, 2005

Development of joint application strategies for two microbial gene finders.
Bioinformatics, 2004

PathFinder: reconstruction and dynamic visualization of metabolic pathways.
Bioinformatics, 2002

Rose: generating sequence families.
Bioinformatics, 1998

Generating Benchmarks for Multiple Sequence Alignments and Phylogenic Reconstructions.
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997

GeneFisher-Software Support for the Detection of Postulated Genes.
Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996